similar to: Display list redraw incomplete

Hi everyone, I have 2 environments (2 different R sessions) as described below: Session 1: Name of the environment: "CrlmmInfo" Objects in the environment: index1: logical index - length 238304 index2: logical index - length 238304 priors: list of 4 - (matrix 6x6, 2 vectors of length 6, vector of length 2) - all num params: list of 4: centers [238304 x 3 x

Hi everyone, I have 2 environments (2 different R sessions) as described below: Session 1: Name of the environment: "CrlmmInfo" Objects in the environment: index1: logical index - length 238304 index2: logical index - length 238304 priors: list of 4 - (matrix 6x6, 2 vectors of length 6, vector of length 2) - all num params: list of 4: centers [238304 x 3 x

I'm bringing this issue to r-devel as my idea of sending it to r-help appears to be wrong. The following is reproducible in R-patched and R-devel (also in older versions). An outlier is inserted in group E and the last plot by plot.lm suggests that the point belongs to D. It appears to me that: * (facval, rsp) and * x$xlevels[[1L]][order(sapply(split(yh,mf[,1]), mean))] are sorted

Hi, first of, my apologies for the possibly off-topic message regarding a problem when installing the XML package (I meant to post at omegahat- help, but I get 404 at http://www.omegahat.org/mailman/listinfo) When installing the XML package using: install.packages("XML") everything seems to go fine... but then I try to load the package and I get: > library(XML) Error in

Hi everyone, it's been a while I've been trying to save a plot created via lattice:::xyplot if I have a file tst.R with the following code: y <- rnorm(100) x <- rnorm(100) z <- sample(letters[1:4], 100, rep=T) library(lattice) bitmap("tst.png") xyplot(y~x|z) dev.off() and I source it, I get the tst.png file, which is a blank page. If I copy and paste instead, I

Hi, I am trying to install GenomeGraphs package from bioconductor, but failed by a non-zero exit error. From the error message, it seems that there is a shared library problem. Any suggestion on fixing it? Thanks so much. > sessionInfo() R version 2.10.1 (2009-12-14) x86_64-unknown-linux-gnu locale: [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C [3] LC_TIME=en_US.iso885915

Hi, Until now, I thought that the results of glm() and bigglm() would coincide. Probably a naive assumption? Anyways, I've been using bigglm() on some datasets I have available. One of the sets has >15M observations. I have 3 continuous predictors (A, B, C) and a binary outcome (Y). And tried the following: m1 <- bigglm(Y~A+B+C, family=binomial(), data=dataset1, chunksize=10e6)

hey people I'm new to the list and would like to say thanks to everyone that has worked on syslinux/isolinux. It's one of those tools that everyone uses at some stage but no-one ever really takes much notice of it - mainly because *it just works*. So congrats ... Now onto my question - I am customizing Fedora Core and I want to change the isolinux boot.msg screen to display some

Hi, I tried Rsync 3.0.0pre8 on my mac running os X 10.5. I was very pleased about the --iconv feature, as i have to sync some LINUX-machines and I had really trouble with some filenames. But I found one strange thing in connection with the mac. First of all, the translation between the LINUX ISO-8859-15 and the mac ut-8 works (nearly) perfect. As I live in Germany, we have often filenames

Since compiling R 2.5.0 from source on my Mac (PowerBook) I've noticed some strange behavior when plotting. I'm not sure if it's a problem with my setup/compilation because I feel like a problem as basic as this one would have been reported already. I'm running R with X11 and R was built with gcc 4.0.1. Basically, I run > plot(0, 0) > dev.off() X11 4 Warning message:

I was just wondering if anyone knows what could be the problem with my exporting of plots. Below is the error messages I get when trying to export my plots (all error messages at the same time). I do get a file produced which works but I don't know why these messages appear. Doesn't matter if it is a pdf or a png or any other format I export to. Also, when exporting to png I get

Hi all, This has been very frustrating for me trying to get this acts_as_ferret working well on a Fedora box. On my mac it works great, no problems with locale, but when I put the code live on my Fedora server, it complains about the locale setting (Error occured at <analysis.c>:498 Error: exception 2 not handled: Error decoding input string. Check that you have the locale set

Hi everyone, say I have a function called 'foo', which takes the argument arg1. Is there any mechanism that I can use to "learn" about the variable where foo(arg1) is going to be stored? For example: x <- foo(arg1) so, inside foo() I'd like to be able to get the string "x". if, foo(arg1) was used insted, I'd like to get NA. thank you very much, b

https://bugzilla.samba.org/show_bug.cgi?id=5615 Summary: iconv conversion not applied to symlinks Product: rsync Version: 3.0.3 Platform: Other OS/Version: SunOS Status: NEW Severity: normal Priority: P3 Component: core AssignedTo: wayned@samba.org ReportedBy: nils.goroll@hamburg.de

Thanks Jeremy, i'm analyzing this with the application team, we'll see what we can find. > I was hoping to find a way for the samba4 server to behave like samba3 (as > in ignoring bad characters and replacing them with an underscore > character), which in the end resulted in the best compromise. In the meantime, do you have any idea why there is difference between the two

I am moving this from r-help to r-devel. Based on offline communications with Jim, suppose dat is defined as follows: set.seed(123) dat <- data.frame(ID= c(rep(1,2),rep(2,3), rep(3,3), rep(4,4), rep(5,5)), var1 =rnorm(17, 35,2), var2=runif(17,0,1)) # Then this ave call works as expected: ave(dat$ID, dat$ID, FUN = function(x) seq_along(x)) # but this apparently identical calculation

Hi, I've using package DEXSeq that implements functions with nCores for speed-up. The functions work fine, but I found out that the children processes were not terminated, they still hold memory, and new command will start up new children processes. So if I don't manually kill those orphan processes, they will cause problem. I was qlogin to SGE cluster node to run R. From our

Hi All, I'm working on analyzing a large data set, lets asume that dim(Data)=c(1000,8700). I want to calculate the canberra distance between the columns of this matrix, and using a toy example ('test' is a matrix filled with random numbers 0-1): > system.time(d<-as.matrix(dist(t(test), method = "canberra", diag = FALSE, upper = FALSE, p = 2))) user system

Hi everyone, Firstly, I'm sorry for the cross-post. I re-read the posting guide and it appears my question is more related to r-devel.... (i think :-) ) I downloaded the source code available at: http://cran.fhcrc.org/src/base/R-2/R-2.4.0.tar.gz to a linux machine (Linux 2.6.11-1.1369_FC4smp #1 SMP). I successfully configured and compiled it, which means I'm able to run it from the

I am having trouble getting an install of RCurl to work properly on a Unix server. The steps I have taken are: 1. installed cUrl from source without difficulty 2. installed RCurl from source using the command ~/R_HOME/R-devel/bin/R CMD INSTALL -l ~/R_HOME/R-devel/library ~/RCurl_0.8-0.tar.gz I received no errors during this install 3. when I go back to R and require(RCurl), I get >