similar to: RFC: allow packages to advertise vignettes on Windows

In a package 'vig' R CMD build vig (or tools::buildVignettes(dir="vig") with $ cat vig/vignettes/vig1.Rnw \documentclass{article} \begin{document} <<>>= x <- 1 @ \end{document} $ cat vig/vignettes/vig2.Rnw \documentclass{article} \begin{document} <<>>= x @ \end{document} produces vig2.pdf where x is defined with value 1 -- the vignettes share a build

Microsoft Windows R users, I am operating Windows 2000 (build2195) with R1.7. It may be pertinent that I am using a dual head screen with the initial RGui filing the entire area of both screens. When starting R I use the .First() function to add menu items to the RGui interface using winMenuAdd() and winMenuAddItem(). The menus do not display until the RGui window is physically manipulated in

Folks: I don't know whether the following is a Windows or R problem, nor whether it is particular to my particular Windows version/setup. So any help would be appreciated. First the problem, then the info. The following code can be cut and pasted into your R session ############################# ### start R ### create a plot on device 2 (which can be determined by dev.cur()) plot(1:10)

I am using the Windows menu functions below which will work on the first pass, but if I repeat the same script I cannot get the WinMenuAddItem to work. This is a problem if I change the menu structure and reread the source code I am forced to quit and restart Rgui. "try.menu" <- function(){ OS <- .Platform$OS.type GUI <- .Platform$GUI if (!(OS == "windows" &

If I try to build a package with a vignette R CMD build Biobase I see * checking for file 'Biobase/DESCRIPTION' ... OK * preparing 'Biobase': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to re-build vignettes * creating vignettes ... OK * cleaning src Error in setwd(pkgname) : cannot change working directory Execution halted This is

Hi again, I have been playing around with the order of loading packages, and as far as I can tell, there's nothing specific with affycoretools that's causing my Rgui to crash (i.e., shuts down and the Microsoft 'please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by

Hi all, In the CHANGES file for R-2.3.0alpha, there is the following statement: winMenuAdd() now has no limits on the number of menus or items, and names are now limited to 500 (not 50) bytes. However, I can reproducibly get a segfault using this (admittedly silly) example: for( i in 1:5) winMenuAdd(paste("Test", letters[i], sep="")) for(i in 1:5) for(j in 1:24)

I?m preparing a package (fastR) for submission to CRAN, but the vignette index keeps going AWOL, or at least R CMD check ?as-cran thinks so. I?ve tried several things and gave myself the weekend to think of other things, but I can?t figure it out. Perhaps someone on the list can lend a hand. Here?s one example situation, where I build the index.html file myself and put it in inst/doc/index.html

From: Gabor Grothendieck > On Apr 11, 2005 11:28 AM, Martin Maechler <maechler at stat.math.ethz.ch> wrote: > > > > If you use R 2.1.0 beta (which you should consider seriously as > > a good netizen ;-), this is as simple as > > > > > RSiteSearch("String manipulation---mixed case") > > A search query has been submitted to

I just noticed the following in Rgui: > winMenuAdd('test') # adds a menu > winMenuAddItem('test', 'item', 'x') # adds an item to it > winMenuDel('test') # deletes the menu... > winMenuItems('test') # but leaves the item behind. item "x" Would anyone object if I changed winMenuDel so that it deleted the

I run R 1.9.0 on windows 2000, and have the following libraries installed: affydata_1.3.1 affy_1.4.23 Biobase_1.4.10 DynDoc_1.3.14 gcrma_1.0.6 hgu133acdf_1.4.3 hgu95av2cdf_1.4.3 hgu95av2probe_1.0 matchprobes_1.0.7 moe430acdf_1.4.3 multcomp_0.4-6 mvtnorm_0.6-6 rae230acdf_1.4.3 reposTools_1.3.29 rgu34acdf_1.4.3 tkWidgets_1.5.1 widgetTools_1.2.7 1. The rma function (in affy library) always crashes.

I am trying to get a script to start automatically when I run the GUI version of R version 1.9.0, started from a .bat file (WINDOWS), but I'm getting strange errors In version 1.8.1 I was able to run a script automatically by copying the script into the file .Rprofile and running Rgui from a .bat script, but in version 1.9.0 I'm getting errors like: Error in inherits(x,

The Samba ports are not filtered. The firewall is between STG-DC and SAMBADC (both of them sync correctly). The sync problems happen in VIG-DC3, which is behind the same firewall of STG-DC. Here's nmap output (SAMBADC is 172.16.50.9): root at vig-dc3:~# nmap -Pn 172.16.50.9 Starting Nmap 7.93 ( https://nmap.org ) at 2024-05-23 08:22 UTC Nmap scan report for SAMBADC.ugt.ldap (172.16.50.9)

I am not sure if something is wrong with my programming or is a bug of chron or something else. In the following script, db is a large dataframe (dim(db)=c(60698,14)), then I select a very small part for a specific date and compute some basic statistics. date.base is a chron object foo<-function(db,date.base){ date.base<-as.numeric(date.base) #convert to number

I recently wrote a vignette, with the following at the top of the .Rnw file: %%\VignetteIndexEntry{How to use look up tables for h() functions} %%\VignetteDepends{sjedmin, spatstat} Using vExplorer() on this function, I got an error from this part of getVigInfo(): lines <- grep("^%[[:space:]]*\\\\Vignette", file) if (length(lines) == 0) stop("File ", vig,

Dear all, I am a PhD student working with Affymetrix HGU133atag array for analyzing the Latin square experiment. I was trying to generate gene expression index for hgu133atag array for PDNN model. While extracting the chiptype specific data structure, I got the following error- > library(affypdnn) Loading required package: affy Loading required package: Biobase Welcome to Bioconductor

Tenía la versión data.table 1.9.6.- Actualicé a la data.table 1.10.0 y funcionó tal cual lo indicás. Muchas gracias. ?Para eliminar las " adicionales estoy usando: library(stringr) library(plyr) datos$d_nomenclador <- str_replace(datos$d_nomenclador, pattern='\\","', replacement="") datos$nomenclador_descripcion<- str_replace(datos$nomenclador_descripcion,

Hello everyone, I have a problem when loading the library: IlluminaHumanMethylation27k.db I installed the package from zip (from the Bioconductor website), and also installed all the packages it asked for. It went all succesfull: "package 'IlluminaHumanMethylation27k.db' successfully unpacked and MD5 sums checked" But when I am trying to load this library I get an error:

Hi, I'm trying to get this library working under R2.10.0. I downloaded it and installed it from zip file. i get the following output. > library(hgu133a2.db) Error in library(hgu133a2.db) : there is no package called 'hgu133a2.db' > utils:::menuInstallLocal() package 'hgu133a2.db' successfully unpacked and MD5 sums checked > library(hgu133a2.db) Loading required

Hi, This is a follow-up to the problem reported here: https://stat.ethz.ch/pipermail/r-devel/2010-September/058460.html After I updated R-2.12 to 2010-09-13 r52905 on the Bioc build system, some of the packages that have a Makefile in <pkg>/inst/doc still don't build on Windows. For example, 'R\bin\R.exe CMD build adSplit' gives: * checking for file