similar to: Native implementation of rowMedians()

Does anyone know if it is possible to add a dictionary file of known words that becomes part of the *built* package to tell 'R CMD check --as-cran' not to report these words as misspelled. I want this dictionary to come with the *.tar.gz such that it will be available regardless where the package is checked. For instance, currently I get: * using log directory

Hi. I noticed that Brian Ripley found and corrected a bug in MinGW's ld.exe, see http://www.murdoch-sutherland.com/Rtools/. Thanks for this. I wonder if this is the same bug that cause my problems. I have tiny toy package with C code that installs perfectly on R Version 2.2.1 beta (2005-12-18 r36792) [this version was mislabelled "beta" the first few hours on CRAN when the stable

Full_Name: Henrik Bengtsson Version: rw1022 OS: Windows Me Submission from: (NULL) (216.175.126.55) When ${R_HOME}/share/perl/maketitle.pl tries to generate a TITLE that is longer than $lc-3 (=13) characters long, it repeats the package name on line two. Example: Now it generates an output like: com.braju.graphics com.braju.graphics Bla bla bla... But, I believe it should

Full_Name: Henrik Bengtsson Version: 1.3.0 OS: Windows Me Submission from: (NULL) (216.175.122.171) I realized that the title of packages in the library index when they are in a bundle is the title of the bundle and not the package. It looks like the TITLE file, which apparently is used for generating the library index, takes the value of the bundle's title and not the package's title.

To reply to Yves Gauvreau question (Jan 24, 2001) about how to set values within function, it is possible to do without without using the "<<-" assignment operator or other nasty tricks. I had the same problem and I did a nasty workaround two weeks ago implementing the functionality of reference variables, but today I "ran into" the [R] help page for ".Alias".

Hi All, I am trying to make R package using R 2.6.2 And I am getting following error. When I give R CMD check t1\ ---------- Making package t1 ------------ adding build stamp to DESCRIPTION making DLL ... making CGHseg_rewrite.d from CGHseg_rewrite.c making rowMedians.d from rowMedians.c making runavg.d from runavg.c gcc-sjlj -std=gnu99 -Ic:/R/R-2.6.2/include -O3 -Wall -c

Dear Sir, The R interface that i am currently using is R 2.4.1( in Win XP). I am not able to terminate the program by giving the q() command. Each time I pass this command, > q() Error in .Last() : could not find function "finalizeSession" this error creeps in and it neither allows me to save my workspace nor come out of R. Therefore, whenever this happens, I am forced to end the

Hi Everybody, I am having a problem with loading Biobase package. I typed 2 lines below at R prompt > source ("http://boconductor.org/biocLite.R") > biocLite (lib="/usr/local/lib/R/library") which attempted to install a bunch of packages with varying degree of success. Out of 29, 13 failed. Biobase is one of them. As a matter of fact, when I looked at logs, most

Hi, Gordon Smyth brought the following problem to my attention. PROBLEM/"BUG": Using R v1.9.0 alpha for Windows and the latest Rtools from Brian Ripley you get the following problem trying to R CMD build a package (or a bundle); >R CMD build R.basic * checking for file 'R.basic/DESCRIPTION' ... OK * preparing 'R.basic': * checking whether 'INDEX' is

I don't know if this is the correct forum to ask the following question; however, when I search the aroma.affymetrix discussion group, it suggested that I should posted the question to r-help. Here it goes. I followed the instructions on aroma.affymetrix trying to install the packages; following are the steps: > install.packages(c("R.oo", "R.utils"),

I am about to write a "cluster-lite" R solution for myself. I wanted to know whether it already exists. If not, I will probably write up how I do this, and I will make the code available. Background: we have various linux and OSX systems, which are networked, but not set up as a cluster. I have no one here to set up a cluster, so I need a "hack" that facilitates parallel

Is there a way to convert between and integer and a character and vice versa? For instance i <- 65; ch <- intToChar(i); # "A" i <- charToInt(ch); # 65 or even better i <- c(65, 66); ch <- intToChar(i); # c("A", "B") i <- charToInt(ch); # c(65, 66) I have tried to do a ASCII map myself, and I figured out that the ASCII

Hi. If your package require another package in order to define its methods (but afterwards in is not needed), how should one specify this? Is it correct to assume that "Depends" will assure that all packages are loaded (attached? what is the right word) *before* the methods in the current package are defined? Basically I use my own setMethod() called setMethodS3() that is defined in

I'm frightfully new at developing r packages. I'm developing an econometrics package, and each time I update my beta package, I close R, delete the package dir in the library dir, rebuild the zip file, rerun R, reinstall the package and run the functions. Is there a more efficient way? Jeff. Jeff D. Hamann Hamann, Donald & Associates, Inc. PO Box 1421 Corvallis, Oregon USA 97339-1421

Full_Name: Henrik Bengtsson Version: 1.3.0 OS: Windows Me Submission from: (NULL) (216.175.124.18) Even though I know the Rd format might be replaced soon, I am report this just in case: The package optional argument for \link is *only* used when \link is in a \code environment. Example: 1) This link works: \code{\link[base]{cat}} 2) But not this one: \link[base]{cat} It looks like the

Hi, I am trying to using SAMseq() to analyze my RNA-seq experiment (20000 genes x 550 samples) with survival endpoint. It quickly give the following error: > library(samr)Loading required package: imputeLoading required package: matrixStats Attaching package: ?matrixStats? The following objects are masked from ?package:Biobase?: ? ? anyMissing, rowMedians Warning messages:1: package ?samr? was

Hi, I noticed some time ago that, for instance, named vectors that are really makes str() really slow when displaying the names attribute. I don't know exactly when this started, but it wasn't the case say 1-2 years ago. Example (on a WinXP 1.8GHz): > s <- 1:1000; names(s) <- s > system.time(str(s)) Named int [1:1000] 1 2 3 4 5 6 7 8 9 10 ... - attr(*, "names")=

I'm trying to troubleshoot a case where R crashes on Windows. It does not occur at all with my R v2.1.0 patched (2005-05-09), but happens on R v2.1.1 (patched or non-patched) in many different cases. The R v2.2.0dev (2005-07-15) also got this problem (although it won't crash on the below example). I previously reported this

Hi, help on 'mahalanobis' (in the stats package in Rv2.2.0) now says: "Description: Returns the Mahalanobis distance of all rows in 'x' and the vector mu='center' with respect to Sigma='cov'. This is (for vector 'x') defined as D^2 = (x - mu)' Sigma^{-1} (x - mu)" It does return D^2 as written. However,

I use smooth.spline(x, y) in package modreg and I would like to get value of penalized log likelihood and preferable also its two parts. To make clear what I am asking for (and make sure that I am asking for the right thing) I clarify my problem trying to use the same notation as in help(smooth.spline): I want to find the natural cubic spline f(x) such that L(f) = \sum_{k=1}{n} w[k](y[k] -