similar to: pb with dyn.load - fortran code now attached

Hi, here are a couple of strange things happening with R.2.2.0 compiled under Mandrake-10.1 At the begining of the story I have segmentation fault using package RandomFields in conjuction with some Fortran code of mine loaded with dyn.load. One of my fortran programs contains a subroutine named fstat Trying to trace , I simplified the sequence as much as possible and I end up with the the

After upgrading from mandrake 10.1 to mandriva 10.2 I can't build shared archive with R 2.2.0 [guillot at laplace src]$ R CMD SHLIB main.f sub.f wrapper.c gcc -shared -L/usr/local/lib -o main.so main.o sub.o wrapper.o -lg2c -lm -lgcc_s /usr//bin/ld: cannot find -lg2c collect2: ld returned 1 exit status make: *** [main.so] Erreur 1 I guess the information in

Hi all, I'm working out some Fortran code for which I want to compute the Choleski decomposition of a covariance matrix in Fortran. I tried to do it by two methods : 1) Calling the lapack function DPOTRF. I can see the source code and check that my call is correct, but it does not compile with: system("R CMD SHLIB ~/main.f") dyn.load("~/main.so") I get: Error in

Hi, I have a package of my own which seems to work fine under linux. I want to make a compiled version for windows. (I work with windows 2000 and R 2.0) I have followed the steps described in the file readme.packages (in the top-level directory of the binary installation) and I had a trouble at this step (which aim is not documented): C:\Program Files\R\rw2000\src\gnuwin32>make libR.a

Hi , I'm currently trying to make available a few fortran subroutines and R functions (which make interface to these subroutines), as an R package. I'm doing it under linux with R 1.9.0 (but hope to do it for windows too). I have trouble for loading my fortran code. Here are the steps involved : 1) In R: # Create tree for package

Hi, I have some trouble with the result of a fortran function calling the R binomial RNG: The C function rbinom is wrapped as in the file attached. My main fortran program starts as call rndstart() and ends as call rndend() I happen to call the binomial RNG within a loop as b = ggrbinom(1.d0,0.5d0) write(*,*) 'b=',b In certain cases, after a few iterations in the loop, b get

Hi, all, I have a column like the following: ID TIME sub_001 0 sub_001 24 sub_002 0 sub_002 24 sub_003 0 sub_003 24 sub_004 0 sub_005 24 .. .. is there a way for me to just

I would like to call C routines from Fortran under linux as suggested in section 5.6 of the "Writing R extensions" documentation. I'm familiar with Fortran but not with C. I understand the example provided in Fortran: subroutine testit() double precision normrnd, x call rndstart() x = normrnd() call dblepr("X was", 5, x, 1) call rndend() end but I don't understand

I would like to call C routines from Fortran as suggested in section 5.6 of the "Writing R extensions" documentation. I'm familiar with Fortran but not with C. I understand the example provided in Fortran: subroutine testit() double precision normrnd, x call rndstart() x = normrnd() call dblepr("X was", 5, x, 1) call rndend() end but I don't understand the purpose

Dear list, I apologies first for my English, hope you will understand well my question. I am working on 1/2 hour piezometric data, time unit is second. They present daily oscillation when using the spectrum() function. What I am really interested in, is to find the amplitude corresponding to this oscillation. I work with a college using Matlab, and although we apply the same methodology, our

Having not much success with my previous question I try to reformulate it: I'm simulating a Markow chain in Fortran interfaced with R. Each loop of my Fortran calls various functions of the R RNG through the wrapper given below. In a run of 100 iterations of the Markov kernel, after 20 iterations, the RNG seems like frozen. For example, the first call to the RNG in my loop is:

Hi, I'm using R 7.0 under Linux as a programming interface to Fortran (g77 v0.5.24). Basically, what I want to do is to call a fortran subroutine of mine which performs MCMC computations. Apparently I'm getting into memory management problems. To track the problem I wrote the following small Fortran subroutine (saved as test.f) : subroutine test(n,p) implicit none

In a box running Mandrake 9 with R 1.6.2 I get problems when trying to install packages Matrix and Akima. It seems my gcc compiler and fortran do not talk to each other. Thanks in advance for any help, Gelu The errors are: * Installing *source* package 'Matrix' ... checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes

I'm trying to build R 1.9.0 to get the opportunity to build rpy for some folks at my office. (I'm a Python guy, not an R guy, so I'm completely unfamiliar with the machinations of building R.) I'm having trouble getting past the configure step. A plain old configure generates this output at the end: checking whether we can compute C Make dependencies... yes, using gcc -MM

I'm sure that this question gets asked frequently, but a quick perusal of the list archives shows that it hasn't been asked in a least a month or so, so pardon any repetition. What is the current state of asterisk on linux 2.6? I ask, because I spent yesterday giving it a whirl, and everything seems to go just fine till the very last minute. Zaptel, libpri and asterisk compile just

Hi I am having problems compiling R on a Solaris 10 opteron box we have on trial. checking for Fortran libraries of g77... -L/usr/ccs/lib -L/usr/lib - L/usr/local/lib -L/usr/local/lib/gcc-lib/i386-pc-solaris2.10/3.3.2 - L/usr/ccs/bin -L/usr/local/lib/gcc-lib/i386-pc- solaris2.10/3.3.2/../../.. -lfrtbegin -lg2c -lm -lgcc_s -lfrtbegin: - lg2c: checking how to get verbose linking output from

Yesterday, I installed R2.2.0 for Windows [Version 2.2.0 (2005-10-06 r35749)]. Unfortunately, 'install.packages("Matrix")' produced the following message: Warning in download.packages(pkgs, destdir = tmpd, available = available, : no package 'Matrix' at the repositories I installed lme4, maps, mapproj, CircStats, scatterplot3d, gregmisc, Hmisc without

Dear all, I would like to call TLNise ("Two-Level Normal indipendent sampling estimation") software within R. This software estimates a hierarchical model and it can be download from Philip Everson's website at "http://www.swarthmore.edu/NatSci/peverso1/TLNise/tlnise.htm". The TLNise software consists of: 1) a Fortran source code (tlnisemv1.f) and 2) a Splus code

The interpretation of regular expressions with repetition quantifiers in the 'gregexpr' function seems to have changed between R Version 2.2.0 and 2.3.0. The 'gsub' function, however, gives the same results in R Versions 2.2.0 and 2.3.0. Below is an example that demonstrates the version differences of the 'gregexpr' function. I am not sure whether this new behavior is

Full_Name: Utz J. Pape Version: 2.2.0 OS: linux Submission from: (NULL) (141.14.23.12) If I use phyper and set parameter x equal to k (meaning that all balls I draw are white) phyper returns 1 which is not (always) correct: pape at xxx:~> R2.2.0 --vanilla R : Copyright 2005, The R Foundation for Statistical Computing Version 2.2.0 (2005-10-06 r35749) ISBN 3-900051-07-0 R is free software