similar to: R CMD check (again)

Ben Bolstad experienced something odd while running R CMD check over a package of ours using r-devel (yesterday's fresh). He tracked down the problem to a vignette calling 'library(MASS)'. Please kindly ignore if this is a known (and temporary) issue. Laurent ----- Forwarded message from Ben Bolstad <bolstad@stat.berkeley.edu> ----- Return-Path:

Hi, I am trying to compile R for 64 bits on a mainframe running IBM AIX. Setting the environment variable OBJECT_MODE=64 leads to hanging while checking whether leap seconds are treated according to POSIX... Interestingly, it works fine when OBJECT_MODE=32... Any pointer would help me much... Thanks, L. -- -------------------------------------------------------------- currently at the

Dear all, I compiled R-1.6.2 for IBM-AIX (using the native compilers) and I am facing problems to instanciate (rather) large matrices. I have: > m <- matrix(0, 640*640, 102) Error: cannot allocate vector of size 326400 Kb I am not truly familiar with AIX, but this does not seem to be caused by kernel/user limitations: ulimit -Ha gives: core file

Hi, I'm not sure what the recommended thing to do here would be: In the lattice library, panel.loess needs to use loess.smooth(), which is in the modreg library. Now should I (1) make lattice depend on modreg, and call require(modreg) in zzz.R OR (2) use autoload("loess", "modreg") I like the second option better, as a particular session might not need panel.loess.

Dear all, I had to extracts/set elements from/in a matrix. Let say I have two vectors dim1 and dim2 of indices in the respective two dimensions of a matrix: I want to extract all the corresponding elements. I the case of a nxn matrix, dim1 <- 1:n and dim2 <- 1:n would extract the diagonal. I know one way would be to use the functions 'row' and 'col', but the matrixes I

Dear R-users, I currently have trouble in trying to compile R-1.3.0-patched on Compaq OSF1. -------- >uname -a OSF1 adenine.fysik.dtu.dk V4.0 1229 alpha -------- The 'configure' step ended seemingly corretly: ----------------------- R is now configured for alphaev6-dec-osf4.0f Source directory: . Installation directory: /home/adenine/sysman/laurent/share/ C

Dear all, I may have overlooked something but the following piece of code causes me trouble: > a_data.frame(1:4) > a X1.4 1 1 2 2 3 3 4 4 > apply(a,2,cat) 1 2 3 4Error in ans[[1]] : subscript out of bounds > apply(a,1,cat) 1234NULL Is this the fact my data.frame has only one dimension ? (and do I forget somewhere (but where ?) to specify not to 'drop'

Dear all, The following causes me trouble: > a <- data.frame(2:5,3:6,4:7) > str(a) `data.frame': 4 obs. of 3 variables: $ X2.5: int 2 3 4 5 $ X3.6: int 3 4 5 6 $ X4.7: int 4 5 6 7 > str(data.matrix(a)) int [1:4, 1:3] 2 3 4 5 3 4 5 6 4 5 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:4] "1" "2" "3" "4" ..$ : chr

Hello Laurent, Ray and Greg, I tried the gmake settings. Yet, I still got an Error code 1 message when I run the test. running regression tests don't know how to make ../library/base/R/base (bu42). *** Error code 1 (bu21) Thanks you if you have any idea. Manuel -----Message d'origine----- De : Laurent Gautier [ mailto:laurent at genome.cbs.dtu.dk <mailto:laurent at

Dear R-users, I am currently facing what appears to be a strange thing (at least to my humble understanding). If I understood correctly, starting with the version 1.2.3, R memory allocation can be done dynamically, and there is no need to fiddle with the --nsize and --vsize parameter any longer... So far this everything seemed to go this way (I saw the size of my processes growing when I was

Dear All, Would anybody have any advice to give on that: The Facts: - I installed (compiled) R on SGI IRIX (6.5) - I am not root - I discovered the jpeg device I need now badly doesn't work (postscript is not so happy with 19 millions spots) - after investigation, it appeared the jpeglib.h was detected not recent enough at configure time - the jpeglib.h in /usr/include is version 6a - the

Dear all, I am looking for a way to read tiff data into R (this could be something the pixmap package users could find intersting). I could not find anything related but I suspect something to exists...somewhere... is it really the case ? Thanking in advancing for help/pointers, Laurent -- Laurent Gautier CBS, Building 208, DTU PhD. Student D-2800 Lyngby,Denmark tel: +45 45 25

Dear R-helpers, I have been trying to use the 'configure' feature offered to package writters... but could make it work. The matter may have been discussed before, and a rtfm answer with the place the answer is found is perfect (but I read the 'writing R extensions' manual). The problem is: In my C code I have code conditional to a defined macro. I used autoconf the naive way

Dear all, I updated ('almost' painlessly =) ) the XFree version of my suse distribution 7.1 (could not wait any longer as the screensaver was crashing everything with irregular periodicity)... I have now Xfree 4.1.0 running (with OpenGL 3D going through the Mesa library), and I downloaded MS truetype fonts (as suggested by Mr. Suse). R seems to work... except (so far) the output of the

Dear R-users, I successfully installed the package Rstreams under linux, but my first attempt to do so on SGI IRIX 6.5 (64bits) lead to the following error message. -------------------- laurent at genome> R CMD INSTALL Rstreams Installing source package `Rstreams' ... creating cache ./config.cache checking for ftruncate... yes checking size of long double... 16 updating cache

'getAnywhere' is not reporting methods when there are periods in the class name or the generic name (in R-devel). > getAnywhere( 'predict.loess') A single object matching 'predict.loess' was found It was found in the following places registered S3 method for predict from namespace modreg namespace:modreg with value <<...>> > getAnywhere(

Dear all, In the writing of functions for a package have to deal with (very) large arrays and I was considering that having them in files rather than in memory would help me a bit on the memory side of the things. I was thinking of accessing the elements in the arrays by 'seek' and friends in C. The package RObjectTables seems to provide the framework to do this kind of thing, but I

I am using R to do a loess normalisation procedure. In 1.5.1 I used the following commands to normalise the variable "logratio", over a 2d surface (defined by coordinates x and y): > array <- read.table("121203B_QCnew.txt", header=T, sep="\t") > array$logs555<-log(array$s555)/log(2) > array$logs647<-log(array$s647)/log(2) >

R- Users: Can someone indicate what I am during wrong? This is a script essentially from Venerable & Ripley's text on interpolating a surface with loess function but I can not get it to run. Thanks. John Lewis Professor McGill University Montreal library(MASS) library(modreg) data(topo) par(mfcol=c(2,2), pty="s") topo.loess <- loess(z ~ x * y, topo, degree=2,

One more question... I need to use the Loess() function in the package modreg. What is the argument "formula" meant to be? A -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the