similar to: refman.pdf - bookmarks & links broken (PR#1677)

On 29 May 2018 at 16:37, R P Herrold wrote: | On Tue, 29 May 2018, Dirk Eddelbuettel wrote: | | > On a CentOS 7 machine, I am at a loss with respect to an inability to run a | > full R CMD check as anything involving tex files ends in tears. | | Hi, Dirk | | Have fun at the upcoming conference at UIC | | I seem to have 56 font packages installed under CentOS 7 | locally, but then I work

After configure, make and make check on a linux Suse 7.3 box, I run make dvi and make info with no problems but get a lot of garbage to my screen during make pdf. Is this normal? Is there a bug in this part of the installation? This is part of what I get on the screen: humboldt:/usr/local/R-patched # make pdf make[1]: Entering directory `/usr/local/R-patched/doc' make[2]: Entering

Full_Name: Edward Carney Version: 1.5.0 OS: Win98 Submission from: (NULL) (160.94.222.161) Bookmarks do not work in Table of Contents nor in Index in the refman.pdf file for version 1.5.0. Reading under Acrobat 4.05 Thanks, EC -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send

Hi all, I've got a basic question regarding package documentation and rd.sty. I wrote my first own package, and now I would like to place the documentation into the appendix of another LaTex document. Seemingly I cannot simply \usepackage{Rd}, as this will modify the page-settings of my document. Is there a minimum style file which will just define the environments and commands needed for

Hello there, I have a habit of compiling R-patched and R-devel every few days. Recently, I noticed the following problem: I downloaded both versions with Revision: 40421, Last Changed Date: 2007-01-09. R-patched compiles with no problem. R-devel compiles fine but when it starts to make PDF documentation it generates the following (tail of the "make distribution" output): ! pdfTeX

Recently, I upgraded MiKTeX to the latest versions, and since then there are problems when I try to build R and/or R packages. I tried to build R 1.9.0 beta and R 1.8.1 patched I am running Windows XP Pro, SP 1 MikTeX version is This is e-TeX, Version 3.141592-2.1 (MiKTeX 2.4) (preloaded format=latex 2004.3.27) fpTeX version is This is e-TeXk, Version 3.141592-2.1 (Web2c 7.5.2) (format=latex

Dear R-help, Can some one tell me what could be the problem? I downloaded the R-1.7.1 source and try to compile it on WinXP. "make", "make bitmapdll", "make tcl", "make recommended" all ran w/o problem. However, when I ran "make docs", it failed at creating refman.pdf, with no apparent error that I could see. I have attached the log file

When I try to print out the refman.pdf file of version 1.3.0 to an HP LaserJet 8000 PS printer, I get the error message "Error occurred while downloading a font. This document might not print correctly". The document does not print correctly. The index page looks fine on the monitor, but appear to print with a "Courier" type font that is squeezed to be proportitional. Has

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

In the process of updating R to R 2.7 alpha or R 2.7 beta for the BioConductor 2.2 builds on Windows, I have hit a snag because the BioC build system has long path names (e.g. D:\biocbld\bbs-2.2-bioc\R) and these path names are not resolving properly by MiKTeX 2.7 during vignette construction. Take, for example, the attached vignette from Biobase, Bioconductor.Rnw. I have built R from source

Hi all I am trying to build an R package, which I have successfully done many times before, but have an error I cannot trace. I hope someone can help me. Here's is some edited output (full output below if it is useful): pdunn2 at PDunnUbuntu:~/DSdata$ R CMD build GLMsData * checking for file 'GLMsData/DESCRIPTION' ... OK * preparing 'GLMsData': * checking DESCRIPTION

Hi, This is a follow-up to the problem reported here: https://stat.ethz.ch/pipermail/r-devel/2010-September/058460.html After I updated R-2.12 to 2010-09-13 r52905 on the Bioc build system, some of the packages that have a Makefile in <pkg>/inst/doc still don't build on Windows. For example, 'R\bin\R.exe CMD build adSplit' gives: * checking for file

On 05/29/2018 04:53 PM, Dirk Eddelbuettel wrote: > I noticed it with a local, not-public package -- but it appears to apply with > any source package. I replicated with pkgKitten straight off CRAN and after > checking that it has a six page manual there. I'm having trouble reproducing this one. In my fresh CentOS 7 VM, I can pull the pkgKitten source down, and run R CMD Rd2pdf

Hello, can anyone explain the following error I get when trying to use the CHECK command to check a new version of my pakcage under 1.4.0? ****** ./R CMD check ~/GLMMGibbs.0.5.1/GLMMGibbs * checking for working latex ... OK * using log directory `/homef/jonm/R-1.4.0/bin/GLMMGibbs.Rcheck' ... <Installs library, documentation, and then performs various tests, including the example,

Tom, On 30 May 2018 at 11:34, Tom Callaway wrote: | On 05/29/2018 04:53 PM, Dirk Eddelbuettel wrote: | > I noticed it with a local, not-public package -- but it appears to apply with | > any source package. I replicated with pkgKitten straight off CRAN and after | > checking that it has a six page manual there. | | I'm having trouble reproducing this one. In my fresh CentOS 7 VM, I

Full_Name: Ziying Sherwin Version: 1.3.0 OS: Solaris 2.8 Submission from: (NULL) (130.14.31.32) We tried to install R on our Sun Solaris 2.8 machine using gcc 3.0. During the compilation, we got error messages like: gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c sockconn.c -o sockconn.o gcc -shared -o internet.so Rsock.o internet.o

I am looking for the most efficient way to replace all occurrences of NaN in a data frame with NA. I can do this with a double loop, but it seems that there should be a higher level and more efficient way. With is.na, I could use ifelse, but if.nan seems not to have similar capabilities. TIA, Jon Peck Jon K. Peck jkpeck@aya.yale.edu [[alternative HTML version deleted]]

I would like to have my computer at home and my computer at work to share the same bookmarks. My idea was to have each of the computers sync with a server's bookmark file. If the client has a newer file than the server it would upload it, if the client has an older file it would download it. I already have the authentication keys set up and want to do it over ssh. Would this be one way to

OK. Now that I have already upgraded, how do I migrate my bookmarks. :( Should have exported them before the upgrade, I suspect....

If you use Notes 5 with wine, you probably have the problem, that the bookmarks frame doesn't open when you click on Favourites or other folders on the left side. Solution: Create a Memo in Notes Go to the Body field and select Create/Hotspot/Button In the lower half, select Script and paste in this code Sub Click(Source As Button) Dim db As New