similar to: html bug in internal links of documentation (PR#1117)

It seems that the text command isn't working for a postscript device. Here is my code: #----------------------------- # I have stored some data in a 21 by 21 matrix called mat x <- 1:ncol(mat); y <- 1:nrow(mat); labs <- c(" ", "1298", "1537", "TP53", "786", "974", "1303", "1288", "1294",

I am trying to use wireframe at the moment and the axis labels are overlapping with the tick labels. It seems that gpar does not yet utilize the mgp argument. Is there anyway to manipulate the position of the axis labels? The best I can manage so far is to manipulate the cex so as to shrink everything down. thanks, Carlo Maley -- Dr. Carlo C. Maley Staff Scientist Fred Hutchinson Cancer

I'm not sure this belong here... Package: MASS Version: 6.2-8 I get a core dump when I call isoMDS with an incorrect argument for y. With d as an object of class "dist": > isoMDS(d,2) Program received signal SIGSEGV, Segmentation fault. 0x40229e43 in VR_mds_init_data () at MASS.c:157 --please do not edit the information below-- Version: platform = i586-pc-linux-gnu

The following problem occurs in R 1.4.0 and 1.3.1 for Windows95, but not in R 1.2.0 for Windows95. The problem does not occur in R 1.4.0 for Linux PC, Linux Alpha and HP-UX. Sometimes, the type of 'Size' of an object of type 'dist' changes from integer into double. Running cmdscale on such a 'dist' object gives invalid results. I don't know what should be considered

I reported this earlier, and have got reports that others have the same promlem on UNIX machines, so it is not only a windows problem S I file a bug report. The function (boot.stat) given at the end produces a postscript file, which cannot be included correctly in LaTeX. Specifically, the image in LaTeX (when translated by dvips to postscript) becomes very small, not using the bounding box, and

'make check' fails on d-p-q-r-tests: > ##-- non central Chi^2 : > xB <- c(2000,1e6,1e50,Inf) > for(df in c(0.1, 1, 10)) + for(ncp in c(0, 1, 10, 100)) stopifnot(pchisq(xB, df=df, ncp=ncp) == 1) Error: pchisq(xB, df = df, ncp = ncp) == 1 is not all TRUE Execution halted Here is some more testing: xB <- c(2000,1e6,1e50,Inf) for(df in c(0.1, 1, 10)) for(ncp in c(0, 1,

The last line gets duplicated when a file is read like this: a <- scan(file=filename, what="", sep="\n", strip.white=c(TRUE), quiet=TRUE) (This error does not occur on Linux, the only other platform I tested.) Version: platform = hppa2.0-hp-hpux10.20 arch = hppa2.0 os = hpux10.20 system = hppa2.0, hpux10.20 Actually, all binaries are

library(mva) data(USArrests) hc <- hclust(dist(USArrests), "ave") plot(hc) # OK dump(c("hc"), "tst") rm(hc) source("tst") plot(hc) # Error in plot.hclust(hc) : invalid dendrogram input The same problem occurs with dput/dget --please do not edit the information below-- Version: platform =

Running 'make check' I get two errors: running code in 'mva-Ex.R' .../usr/lib/dld.sl: Unresolved symbol: meet_ (code) from /users1/kleiweg/R-1.6.0-source/library/cluster/libs/cluster.sl running code in 'tcltk-Ex.R' .../usr/lib/dld.sl: Unresolved symbol: Tcl_EvalObjv (code) from /users1/kleiweg/R-1.6.0-source/library/tcltk/libs/tcltk.sl Version: platform =

I use as.vector() on a data frame and I get a data frame in return. No warning. I have to use as.matrix() first. Why is that? Doesn't make sense to me. I'm using R 1.2.0 on Linux. > F <- data.frame(a = c(1,2,3), b = c(4,5,6)) > F a b 1 1 4 2 2 5 3 3 6 > V <- as.vector(F) > V a b 1 1 4 2 2 5 3 3 6 > attributes(V)

I noticed this bug before in R 1.2.0. Can't remember whether it was there in earlier versions. > help.start() Making links in ~/.R ... If /home/peter/sbin/netscape is already running, it is *not* restarted, and you must switch to its window. Otherwise, be patient.. > help("help", package = "base") help() for help is shown in

If tbl is an object of class 'dist', you can do this: a <- sammon(tbl, k=3) But you can't do this: b <- isoMDS(tbl, k=3) Wouldn't it be sensible to have identical interfaces to sammon() and isoMDS() ? I think all that would be needed is to change this: isoMDS <- function(d, y=cmdscale(d, 2), maxit=50, trace=TRUE) { ...into this: isoMDS <-

I have a package with in the documentation: in \usage : \dots in \arguments: \ldots This is how I interpreted "Use \dots for the dots in function argument lists ..., and \ldots for ellipsis dots in ordinary text" in "Writing R Extensions". When I did `R CMD check' in R version 1.3.1 all was fine. With R version 1.4.0 I get : * checking for undocumented arguments

Peter Kleiweg skriver... > R dumps core if the first command I use is Sys.time(): > > > Sys.time() > Segmentation fault (core dumped) (peter) ~ R -d gdb [snip] GDB 4.16 (i386-redhat-linux), Copyright 1996 Free Software Foundation, Inc... (gdb) run Starting program: /usr/local/R/lib/R/bin/R.bin R : Copyright 2001, The R Development Core Team Version 1.2.1 (2001-01-15)

I'm not sure this is a bug in R. Since a few weeks I have a new PC, SuSE 8.0 installed. When running demo(graphics) I get after a few graphs: Error in title(main = "January Pie Sales", cex.main = 1.8, font.main = 1) : X11 font at size 22 could not be loaded And the demo stops. This is in R 1.6.0. I get the same in R 1.5.1 on HP-UX, but using my PC as the X-server.

Should I submit this as a bug report? --- reg-tests-3.Rout.save Thu Jul 3 09:55:40 2003 +++ reg-tests-3.Rout Sun Nov 23 13:10:57 2003 @@ -1,17 +1,18 @@ -R : Copyright 2003, The R Development Core Team -Version 1.8.0 Under development (unstable) (2003-07-03) +R : Copyright 2003, The R Foundation for Statistical Computing +Version 1.8.1 (2003-11-21), ISBN 3-900051-00-3 R is free software and

Has anyone succeeded in compiling R on HP-UX? I'm trying to compile R version 1.1.0 on a HP-UX 10.20 machine. I run into the following problems: I got a compile error on src/unix/X11/rbitmap.c which I solved by including setjmp.h. After that, and after editing the Makefiles a bit cause gcc en ld can't find all the libraries, I finally get it to compile. Then I run "make

Anyone who is interested in using optimal colour palettes should look at the work of Cindy Brewer: www.colorbrewer.org I have written code to use her colour schemes in R. It is included below. Perhaps someone may find this interesting enough to work into a package. Included also is a function showpalette, which was posted here a while back. I don't remember who wrote it. I have copied all

Anyone using the penalised partial likelihood routines in survival5 should update their version. A bug has been fixed in the S package: in coxph() models with penalised likelihood and strata it was possible in some circumstances to get an infinite loop or perhaps an incorrect answer. The new version (2.3) is on cran.r-project.org and will percolate through CRAN in the next few days. -thomas

Anyone using the penalised partial likelihood routines in survival5 should update their version. A bug has been fixed in the S package: in coxph() models with penalised likelihood and strata it was possible in some circumstances to get an infinite loop or perhaps an incorrect answer. The new version (2.3) is on cran.r-project.org and will percolate through CRAN in the next few days. -thomas