similar to: mle (PR#560)

lme() and gls() models from the nlme package are all crashing with R.3.4.0. Identical code ran correctly, without error in R 3.3.3 and earlier versions. The behavior is easily demonstrated using one of the examples form the lme() help file, along with two simple variants. I have commented the errors generated by these calls, as well as the lines of code generating them, in the code example below.

On 11 May 2017 at 10:17, Erwan Le Pennec wrote: | Dear all, | | I've stumbled a similar issue with the package cluster when | compiling the 3.4.0 version with the settings of Fedora RPM specs. | Compiling R with the default setting of configure yields a version that | works for cluster... and nlme. | | I did not find the exact option that was the cause of this issue | but

Dear all, I've stumbled a similar issue with the package cluster when compiling the 3.4.0 version with the settings of Fedora RPM specs. Compiling R with the default setting of configure yields a version that works for cluster... and nlme. I did not find the exact option that was the cause of this issue but I'm willing to help. Erwan PS: This is the reason why R is

On Thu, 2017-05-11 at 06:37 -0500, Dirk Eddelbuettel wrote: > On 11 May 2017 at 10:17, Erwan Le Pennec wrote: > > ?????Dear all, > > > > ?????I've stumbled a similar issue with the package cluster when? > > compiling the 3.4.0 version with the settings of Fedora RPM specs.? > > Compiling R with the default setting of configure yields a version > > that?

Dear R-helpers, I'm learning how to compile R packages with fortran routines and use the acepack source as an example. After some hiccups (Guido told me about the need to set make_mode=UNIX) I got to the following: `make pkg-acepack' runs without error (see below), but it does not * compile any .f file in acepack/src * (hence) try to create any dll file or libs (I'm

Hello, Does anyone on this list know what inner_perc_table is or where it is typically found? I am trying to modify some source code and it is used with the .C() function. When I try and run it, it states that 'inner_perc_table is not found'. It is only called in such a way and isn't defined at any point in the previous code in which the function works. Should this be in some other

Greetings, I am working on modifying some code from the nlme package. I have had many discussions on the mixed models mailing list and have been directed to simply 'hack' the source code to have the degrees of freedom generated by one function to use in the output of another function that doesn't generate them. My current holdup is an error regarding a .c file called

On 09/22/2017 06:55 PM, Tim Broberg wrote: > Do I understand correctly, that you find the security of group 14 unacceptable and yet you left it enabled? In the end, I'm trying to ensure a minimum equivalent of 128-bits of security. Group14 is 2048-bits, which roughly translates to 112-bits. [1] To this end, I disabled the "diffie-hellman-group14-sha1" and

Could you help me in getting a package to compile from source in Windows? I'm running Windows NT 4.0 on a pentium 450 with 128 Mb of Ram. I've got R 1.0.0. I am developing a package for R which includes a bit of C code. I have things working in Unix just fine, and now I want to port it to Windows NT. I've been following the instructions in the R complements to Venables and

You are using the wrong make. Please read the instructions very carefully. You _must_ use the cygwin make with the supplied Makefiles. As INSTALL says: You will also need suitable versions of at least make, sh, rm, sed, (g)awk, mkdir, echo, cp, cut, diff, grep, egrep, pwd, expr and cat; we use those from the cygwin distribution (http://sourceware.cygnus.com/cygwin and several

You are using the wrong make. Please read the instructions very carefully. You _must_ use the cygwin make with the supplied Makefiles. As INSTALL says: You will also need suitable versions of at least make, sh, rm, sed, (g)awk, mkdir, echo, cp, cut, diff, grep, egrep, pwd, expr and cat; we use those from the cygwin distribution (http://sourceware.cygnus.com/cygwin and several

After several hours of trial and error I've figured out how to create packages for use by rw1000 ("Writing R Extensions" seems not to cover this). I haven't been able to figure out how to make help files work. I want plain text only, via help(name) or ?name. I create a 'help' subdirectory containing a 00Titles file and function-specific help files in the package

Has anyone noticed this behavior: > library(ctest) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "J: \STATS\RW1000/library/ctest/libs/ctest.dll": LoadLibrary failure > library(ctest) > version _ platform Windows arch x86 os Win32 system x86, Win32 status major 1 minor 0.0 year 2000 month

Dear r-helpers, Spencer Graves and Manual Morales proposed the following methods to simulate p-values in lme4: ************preliminary************ require(lme4) require(MASS) summary(glm(y ~ lbase*trt + lage + V4, family = poisson, data = epil), cor = FALSE) epil2 <- epil[epil$period == 1, ] epil2["period"] <- rep(0, 59); epil2["y"] <- epil2["base"]

Hope one of you could help with the following question/problem: We would like to explain the spatial distribution of juvenile fish. We have 2135 records, from 75 vessels (code_tripnr) and 7 to 39 observations for each vessel, hence the random effect for code_tripnr. The offset (‘offsetter’) accounts for the haul duration and sub sampling factor. There are no extreme outliers in lat/lon. The model

Hi, I'm analyzing a large number of large simulation datasets, and I've isolated one of the bottlenecks. Any help in speeding it up would be appreciated. `dat` is a dataframe of samples from a regular grid. The first two columns are the spatial coordinates of the samples, the remaining 20 columns are the abundances of species in each cell. I need to calculate the species richness in

Hello. I am trying my hand at modifying the varFunc class varExp, but I must be missing a step. All I want to do right now is make a working copy of varExp, call it varExp2, and then later change it. coef.varExp2, coef<-.varExp2, and Initialize.varExp2 all seem to work properly after I construct them. I can successfully use the commands: v2 <- varExp2(form = ~age|Sex,fixed =

This summer I and a colleague built a package for R v 1.9.1 containing C-code under Windows. That only worked for us when R was installed in c:\program files\R. Now I have R v 2.0.1 and the same package won't build. I get the following C:\Program Files\R\rw2001\bin>rcmd check "c:\program files\r\rw2001\src\library\ sag" * checking for working latex ...latex: not found NO * using

Hello, I have been trying to install library boot and it's giving me the warning message "No R source code in library: library(boot)". I downloaded the library correctly and unzipped it to rw1000/library, so I don't know what the problem could be. If anyone knows, I would greatly appreciate it. Thank you.

(Sorry, I had the previous emails on a different machine.) Thanks to Prof Ripley for diagnosing the problem with inconsistent capitals under Win98. It's 'interesting': * I had ...\acepack\Src\Ace.f Avas.f and Rlsmo.f (tar'ed in a Unix machine and Ws_FTP'ed to the PC) * when the directory name was changed to ...\acepack\src it still didn't work *