similar to: RCMD check fails on "checkin installed package size"

Hello, I am trying to run "RCMD check" on a package. It performs OK, with the exception of a single warning: * checking package vignettes in 'inst/doc' ... WARNING Package vignette(s) without corresponding PDF: AnnotationFuncsUserguide.Rnw As I understand the problem, the vignette is not built. However, I have no problems in doing so manually. How do I fix this problem? I

Hello, This question popped up on the bioc-devel list, I'm forwarding it here. I know that sources for R-2.14 alpha can be found here: http://cran.r-project.org/src/base-prerelease/ But the OP (below) is asking about Windows binaries. Dan ---------- Forwarded message ---------- From: Stefan McKinnon H?j-Edwards <Stefan.Hoj-Edwards at agrsci.dk> Date: 2011/10/4 Subject: Re:

Hi all, I have just installed R 2.13.0 and I am experiencing problems with the terminal, but not the with the GUI interface. I am Windows 7. When running "R" or "Rterm" from a commandline I receive the following: Warning message: In normalizePath(path.expand(path), winslash, mustWork) : path[3]="C:/Programmer/R/R-2.13.0/library": Adgang n?gtet R version 2.13.0

Dear R-help, I have a very large ascii data file, of which I only want to read in selected lines (e.g. on fourth of the lines); determining which lines depends on the lines content. So far, I have found two approaches for doing this in R; 1) Read the file line by line using a repeat-loop and save the result in a temporary file or a variable, and 2) Read the entire file and filter/reshape it using

I am trying to build a dll writen in C to be called by R. Interestingly, when I set the global environment variable PATH to be "c:\Rtools\bin;C:\Rtools\gcc-4.6.3;C:\Program Files\R\R-3.1.1\bin\*i386*;" and I typed "RCMD SHLIB Permutation.c" in Cygwin, the dll was compiled and I can sucessfully call functions after I had loaded it into 32 bits R via .Call. However, now I want

Hi all, I am trying to call a C function from R (version 2.10.1) on a windows machine. The C code is in a .c file, I have pasted the code below although I'm very confident that it does not contain any errors (it is not my code), but also, the problem that I have occurs with every .c file that I have tried this with. I have installed Rtools and included: C:\Rtools\bin; C:\Rtools\perl;

Hello, I recently updated to R version 2.13.2. With R version 2.10.0, I often created and installed R packages, however, I cannot do this since updating. In other words, when I type in Rcmd build -binary PACKAGENAME I receive an error message: "Rcmd is not recognized as an internal...". I suspect that this is because Rcmd.exe is no longer installed in the bin folder, but rather, in

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I am getting this error message when I try to run Rcmd SHLIB myprog.c. There appears to be a missing / between etc and i386 in the path. I am on Windows Vista and am using R version 2.12.1 Patched (2010-12-16 r53864) and just downloaded Rtools 2.12 today. Is this a bug in R? How can I resolve this? C:\tmp2>Rcmd SHLIB myprog.c cygwin warning: MS-DOS style path detected:

Full_Name: David Firth Version: 1.2.3 OS: Windows NT4 Submission from: (NULL) (163.1.103.107) Two things that look like bugs: 1. RCMD INSTALL does not seem to cope with quotes in the Windows path. With my path set to PATH="C:\R\Rtools";"C:\R\rw1023\bin";C:\Perl\bin\;C:\WINNT\system32;C:\WINNT;C:\ mingw2\bin I get, for example, C:\R>RCMD INSTALL boot RCMD

Hello, a short question: I cannot find the Rcmd file in the my installed Windows R Program. It is not known as a command inside R (which is not intended as I suppose) nor as an executable or similar file elsewhere? How can I make my own package? Holger -- PD Dr. habil. Holger Perlt Diplomphysiker/Gesch?ftsf?hrer Reinforcement Control GmbH Karl-Heine-Str. 99 04229 Leipzig Germany Phone: ++49

I am receiving this message during Rcmd check proto-3.9.2.tar.gz using "R version 2.13.0 Patched (2011-04-25 r55638)" * checking installed package size ...Error in if (total > 1024 * 5) { : missing value where TRUE/FALSE needed Execution halted I don't get this under R.2.12.x. The size of the tar.gz file is under 600K. What causes this or if its too hard to tell from the

Hi. I need a bit of help. I'm running Windows 7 and "out of the box" versions of Rtools and R (version 2.14.2) and am trying to compile a package that worked before. When I run the command: > Rcmd build -binary mypackage > Warning: unknown option '-binary' i get a warning and it creates the tar.gz file but not the zip file like before. Something has changed with

Hello all, I was checking the newest update of my library before submitting it to CRAN, using R 2.15.0 and Rtools for Windows 215 using Rcmd in the Command Prompt, on my x64 Windows7 laptop. I recently heard that for checking packages for CRAN submission one should use the option --as-cran; previously I was submitting packages, so I was trying that for the first time. The check proceeds fine

Dear all I have tried several times to make and install an R package that i created. However, whenever i get to the last step and try to install the package i get the following error: C:\Rtools\bin>rcmd install "C:\program files\R\R-2.9.2\bin\Test_1.0.tar.gz" Can't open perl script "C:\PROGRA~1\R\R-29~1.2/bin/install": No such file or directory i have re installed

Hello: I'm trying to use Rcmd SHLIB to compile a single file, sann.c, to get sann.dll. I was able to get make libR.a to work, after going into MkRules and changing the line DLLTOOL=$(BINPREF)dlltool -k --as $(AS) to read DLLTOOL=C:/MINGW-1.1/bin/dlltool -k --as $(AS) But now I get: C:\rw1051\src\gnuwin32>Rcmd SHLIB sann.c make: make: Command not found make: *** [libR] Error 127

Indeed, there is no file named "dlltool" anywhere around here! So, at last I am beginning to suspect that my collection of tools is incomplete. What I have got is "rw1020sp.zip" and "http://www.stats.ox.ac.uk/pub/bdr/RWin/tools.zip". These are properly istalled, I think. readme.packages says "If your package has no C nor Fortran nor C++ sources, see `Simple

Dear all, I have some C code using the zlib uncompress. It compiles fine under Win XP (with SP2) with R up to 2.3.1 and generates four files (Makedeps, *.d, *.dll, and *.o): C:\Data\R-packages\cmg>rcmd SHLIB cmg.c -o cmg.dll latex: not found making cmg.d from cmg.c gcc -IC:/PROGRA~1/R/R-2.3.1/include -Wall -O2 -c cmg.c -o cmg.o cmg.c: In function `readcmg': cmg.c:33: warning:

Hi all, First off - this is not flame bait or a troll. It's a genuine question. Since the forum gateway was introduced, it is my opinion that this list is getting flooded with newbie questions. Check the "I just installed Ubuntu" thread for a typical example. I wish to silently remove all wine-forum posts and their replies from my inbox. I plan to filter based on From:

Hello! I have some problems using Rcmd, bacause I get errors I do not understand. I will write down what I did. Perhaps you can help me? I have a small would-be package called "globaltest", containing only the files DESCRIPTION INDEX R/globaltest.R man/globaltest.Rd I say: C:\>Rcmd check C:/Goeman/globaltest In the output it first complains that 'sh', 'make',