similar to: large file error is now SIGUSR1 or SIGINT error

I'm trying to rsync a filesystem from a Solaris 7 server to a Solaris 8 server. I keep getting the following message when rsync attempts to update a particular file: write failed on leelab/NCBI_Data/GenBank/htg : Error 0 rsync error: error in file IO (code 11) at receiver.c(243) Received signal 16. (no core) rsync: connection unexpectedly closed (22672537 bytes read so far) rsync error:

So basically I have made a HTML file with a table in it. Column 3 contains a GenBank number and is always proceeded by "=GenBank">". I want to read the file and return the number which comes directly after this (the contents of column 3). Ideally I would like to save this number as a string for use later in the script, but any help is good help. Been at this for HOURS and

Hi, I am trying to work with the ape package, and there is one thing I am struggling with. When calling the *read.GenBank()* function, I can get it to work with an object created like this: *>x <- c("AY395554","AY611035", ...)* *>read.GenBank(x)* However, I am trying to use the function to fetch several hundred sequences at once. So I have been testing with small

Hi all, I am learning R by "doing". And this is my first post. I want to use R: 1- to fetch a DNA sequence from a databank (see bellow) and 2- store it as FASTA file. The problem: neither an error is prompted nor the fasta file is created. Testing the code (see bellow), I notice that everything works until the *"write.dna" *command - which is not creating the fasta file.

Hi I am trying to read genbank est flat files. Is there any function in R to do that. I was looking for something similar to SeqIO.parse(input_handle, "genbank") in bioPython that convert the genebank sequence into fasta sequence. (One option is to call biopython from R but I am not familiar with python functions so I want to avoid that and I am keeping it as last resort) Thanks and

I suspect you meant WD <- "~/Documents/Scripting/R_Studio/Sequences/" but I am entirely unfamiliar with the packages you are using, and know nothing about what is on your hard drive. For future reference: A) Read the Posting Guide. This is a plain text email list, and your html formatting gets removed leaving a mess that is not always readable. B) Most frequent users of R

Trying to rsync between win2k machines. rsync version is 2.5.3pre (downloaded today) This is the message after 368100 files have been checked: rsync error: received SIGUSR1 or SIGINT (code 20) at rsync.c(229) My cmdline is : c:\sbin\rsync\rsync -az /cygdrive/d/Home xxx@xxx.skelleftea.se::dropZone/GY/ba-disk01 --stats -v -P --timeout=84600 I have tried with both with and without -z (-az or -a)

Hi, I am encountering a error saying-rsync error: received SIGUSR1 or SIGINT (code 20) at rsync.c(229). This error was encountered after 2.5hrs of rsync. What does this exactly mean? I am pretty new the whole concept so not able to figure it out. Regards, Madhavan Chari -------------- next part -------------- HTML attachment scrubbed and removed

I'm trying to transfer thousands of file from a remote machine to my server.Every-time I do this, I'm getting error saying "received SIGUSR1 or SIGINT (code 20) at rsync.c(231)".Pl. suggest me what could be wrong and how can I rectify this. The command i'm using is rsync -avz --copy-links --delete childes.psy.cmu.edu::CHILDES /var/www/localhost/htdocs/childes

https://bugzilla.samba.org/show_bug.cgi?id=2760 wayned@samba.org changed: What |Removed |Added ---------------------------------------------------------------------------- Status|NEW |RESOLVED Resolution| |WORKSFORME ------- Additional Comments From wayned@samba.org 2005-10-17 11:01

Hi Rsync Support, Recently we encountered issue on our prod environment because the rsync seems hanging, it took time building the list.Previously the rsync process was working before 10:24am not until 10:25am. See sample log below. We have one source server and the data files will be rsync to 2 webservers. Please advise what could be the cause of the issue. Please let me know if you need

Howdy, We occassionally get the following error when running our nightly backups: rsync error: received SIGUSR1 or SIGINT (code 20) at rsync.c(229) This happens more on one or two machines than on any of the others. We've looked high and low to see if we're mistakenly sending these signals, but nothing is that we can find. Does anyone know what this might be from? Is it the server

Anyone have any experience with MpiBlast and Lustre. We have MpiBlast-1.4.0-pio and lustre-1.6.3 and we are seeing some pretty poor performance with most of the mpiblast threads spending 20% to 50% of their time in disk wait. We have the genbank nt database split into 24 fragments (one for each of our OSTs, 3 per OSS). The individual fragments are not striped due to the

I'm interested in large file system replication capability of rsync. Could some of you people who use it share how large their mirroring is? What would you say is the largest sized site being mirrored using rsync? Thanks! JP

Dear R-helpers: thank your for your attention. i am a newer to R and i am doing some protein category classification based on the amino acid sequence.while i have some questions urgently. 1. any packages for analysis amino acid sequence 2. given two sequences "AAA" and "BBB",how can i combine them into "AAABBB" 3. based on "AAABBB",how can i get some

hi.. i want to know how is defined signal "SIGUSR1" for dovecot. i want to know what dovecot do when the comand kill was executed in "Rotating logs" in http://wiki.dovecot.org/Logging.. thanks in advance!! -- Salu2 ;)

The latest version of dispatch.fcgi in the trunk has the following code snippet: trap("USR1") do # Go to exit as soon as possible. end One of the issues I encountered while debugging fcgi under windows is that SIGUSR1 is not supported in the native Windows version of Ruby (though it is in cygwin). Currently, I have it commented out to allow dispatch.fcgi to run without blowing up.

First off: Our clusters are LVS balanced Apache 2.2.3 + mod_proxy_balancer + gem mongrel 0.3.13.3 / mongrel_cluster 0.2 + memcached / gem memcache_client + gem rails 1.1.6 on debian boxen, and a pgcluster backend. On 2 of our deployed clusters, we are getting the "spinning mongrel" problem. As the clusters are very low volume right now, it takes days to collect a spinner, making it

Hopefully I can write this out so someone understands it. We are currently running a number of Solaris servers, to which windows computers need to connect. Currently they connect via NFS using hummingbird's NFS client. This requires them to have a separate unix account along with their windows account. Our idea is to implement samba 3.0.0 to eliminate that NFS client. My current

I'd isolate all that RAID stuff from your OS, so the root, /boot, /usr, /etc /tmp, /bin swap are on "normal" partition(s). I know I'm missing some directories, but the point is you should be able to unmount that RAID stuff to adjust it without crippling your system. https://www.howtogeek.com/117435/htg-explains-the-linux-directory-structure-explained/ ?On 6/27/19, 9:37 AM,