similar to: building biOps on macports, and configure--vars

version.string R version 2.15.2 (2012-10-26) I am trying to install biOps on MacOS X 10.8.2 First, I have tiff, fftw-3, jpeg and set paths like cd /usr/include sudo ln -s /usr/local/include/fftw3.h for x in /usr/local/include/j*.h; do sudo ln -s $x; done for x in /usr/local/include/tiff*.h; do sudo ln -s $x; done cd /usr/lib for x in /usr/local/lib/libfftw3.*; do sudo ln -s $x; done for x in

I installed the (binary) biOps package, which can use libtiff and libfftw. Then I used macports to install the libraries (in /opt/local/lib). But I restart R and biOps still does not see the libraries. I've tried adding symbolic links from /opt/local/lib to /usr/local/lib, I've added /opt/local/lib to LIBRARY_PATH, LD_LIBRARY_PATH, and DYLD_LIBRARY_PATH, and it doesn't work. Do you

Hi, I installed biOps on my XP, and installed the required dll packages, jpeg62.dll, libfftw3-3.dll, and libtiff3.dll, as suggested by this forum. Then it worked perfectly for about one week till this afternoon. When I tried to load biOps again, I got the following error message again Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

I have tried several times to load biOps package after reading the posts in this archive regarding the necessity of placing these two libs in the PATH (libjpeg62.dll and libtiff3.dll). I have tried locating the libs in several directories that should have worked, but I still get the following message. ------------------ Error in inDL(x, as.logical(local), as.logical(now), ...) :

I'm running R 2.6.1 on a WXP machine. When I do the following I get an error message. > library(biOps) Error in dyn.load(file, ...) : unable to load shared library 'C:/PROGRA~1/R/R-26~1.1/library/biOps/libs/biOps.dll': LoadLibrary failure: The specified module could not be found. Error: package/namespace load failed for 'biOps' Please help, or comments about what

Hi, I installed biOps on my XP, and installed the required dll packages, jpeg62.dll, libfftw3-3.dll, and libtiff3.dll, as suggested. Then it worked perfectly for about one week till this afternoon. When I tried to load biOps again, I got the following error message again Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

Hi, Attached is a patch which enables FFTW3 to be used by libspeexdsp. Using SSE, the FFT code is more than twice as fast, and it's 50% faster even without SSE. To enable the library, you'll need to call configure with '--with-gpl-fftw3'. Based on the benchmarking we did, this also changes the default FFT to smallft for floating point implementations when not using FFTW3.

Dear All, I found this nice example of PCA application on the web http://www.r-bloggers.com/principal-components-and-image-reconstruction/ and wanted to reproduce the results for myself. I installed biOps the usual way and got the message *package 'biOps' successfully unpacked and MD5 sums checked* but when loading the package, I get *Error in inDL(x, as.logical(local),

Small update. This makes --without-gpl-fftw3 do the expected, and also allow --with-gpl-fftw3=/path/to/fftw3 for alternate installs. It also zeroes the imaginary of the nyquist element; it works without it, but it's recommended to do. -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: speex-fftw3-fix.diff Url:

Hello, I'm running R with windows. Could anybody help me how to install the package biOps (http://cran.mirroring.de/src/contrib/Descriptions/biOps.html) ? I cannot find it at any mirror provided by the GUI; I just found it as "tar.gz" which cannot be installed with the installation method... Maybe, I simply do something wrong? Thanks for any hint! Antje

Buenas dias a tod@s, Quisiera saber si alguien tiene experiencia con el procesamiento de imágenes (en formatos JPEG o PNG) en R y la búsqueda de similitudes / diferencias entre ellas. La idea de lo que me gustaría hacer es: tomar una imagen, cargarla en R y luego analizar su estructura. Para las dos primeras tareas, la libreria ReadImages en CRAN me ha sido útil, pero para la segunda, hasta

I am using a 64 bit machine with CentOS5. I am getting the following errors when I try to install the rimage package g++ -shared -L/usr/local/lib64 -o rimage.so equalize.o fftw_access_func.o freqfilters.o interface.o jpegio.o laplacian.o matrix.o smooth.o sobel.o -ljpeg -lfftw /usr/bin/ld: /usr/local/lib/libfftw.a(fftwnd.o): relocation R_X86_64_32 against `a local symbol' can not be used when

Dear R list members I would be grateful if anyone could guide me to a solution for fixing my rimage package problem described below. I recently upgraded my machine from fedora core 3 to fedora core 6 and then upgraded R from version 2.3.1 from version 2.4.1. I then fired up R, tried to load the rimage library and received the following messages: > library(rimage) Error in dyn.load(x,

Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an automatic way. I had a look on biops and EBImage (Bioconductor) but they are not automatic... Did you already use/know a such package ? Thanks, - Martial _________________________________________________________________ Tchattez en direct en en vidéo avec vos amis !

And here's a patch for Intel Math Kernel Library. This allows commercial users of Speex to use a high-speed FFT library that isn't GPL'd. (You do need to pay for it though). This is 3 times faster than the default FFT in speex, and also faster than FFTW3 since MKL has native support for the complex packing Speex uses. Since Intel hasn't supplied any pkg-config files, and which

Hi folks, I sent this to r-devel (twice) but somehow the email seems to have got mangled. Let me try to ask my question on this forum. any help is very much appreciated. While trying to download the rimage package I am checking at the following step "g++ -shared -L/usr/local/lib64 -o rimage.so equalize.o fftw_access_func.o freqfilters.o interface.o jpegio.o laplacian.o matrix.o smooth.o

Alexander Chemeris wrote: > Hi, > > On 5/27/08, Thorvald Natvig <thorvald at natvig.com> wrote: > >> And here's a patch for Intel Math Kernel Library. This allows commercial >> users of Speex to use a high-speed FFT library that isn't GPL'd. (You do >> need to pay for it though). This is 3 times faster than the default FFT in >> speex, and

Hello everyone,  I'm working in a project to create an special analysis about visualization in some animals and its behaviour, through checking eye movement. The point is this is very important to get data from the image as a resume of what this animal sees. I think an RGB histogram like photoshop does, but I need to get the data from this histogram analysis and I was wondering about using R

Hi all, Am I using the correct syntax to set a custom R_LIBS when running R CMD INSTALL from the command line? I get: R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # Desktop : R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # * installing to library ?/Users/hadley/R? # ERROR: dependency ?ascii? is not available for package ?rapport? But: ls

I am not sure if I should ask this question in this list. But I'll try. Currently I am trying to analyze images using EBImage and biOps. One of the features that I need to extract from various images is the color spectrum, namely, which colors each image consists of. So, each image hopefully can be converted into some sort of color histogram so that color ingredients are easily comparable