similar to: RStudio and findFn{sos}

I am trying to use sos but I get the message below My PC's spec is: MS XP Version 2002 SP 3 Intel Celeron E3300 @ 2.50Ghz Is the error below related to a firewall or something? Thanks and Happy New Year Paolo Error in readLines(link) : cannot open the connection In addition: Warning message: In readLines(link) : unable to connect to 'search.r-project.org' on port 80. found 0

Issue with sos package I am now using R 2.14 and the sos package did work with 2.13 > library(sos) Loading required package: brew Attaching package: 'sos' The following object(s) are masked from 'package:JGR': installPackages The following object(s) are masked from 'package:utils': > library("sos"); findFn("random forest") found 253

Don't do anything yet. I may have found the problem by accident. I tried to use the computer from something else, and it was being drastically slowed down by some leftover processes, which turned out to be xlhtml. That is something that converts Excel files. Apparently, some excel files got into the libraries, and they were causing the indexing to hang completely. I am now running everything

Hello, All: Jonathan Baron is "giving up" maintaining the RSiteSearch database. This breaks three things: (1) The R Site Search web service that Baron has maintained. (2) The RSiteSearch function in the utils package. (3) The sos package, for which I'm the maintainer and lead author. Might someone else be willing to take these over? For me,

Hi, Peter et al.: On 2017-01-09 4:24 AM, peter dalgaard wrote: > On 09 Jan 2017, at 10:53 , Spencer Graves <spencer.graves at prodsyse.com> wrote: > >> # Define an object of class 'dum' >> k <- 1 >> class(k) <- 'dum' >> str(k) # as expected >> >> # Define print.dum >> print.dum <- function(x, ...) >>

library(sos) (mp <- findFn('{molecular properties}')) ????? ** found 7 matches in 4 packages and opened two web pages in my default browser with (a) the 7 matches and (b) the 4 packages. The first function was something for amino acids, like you suggested.? Two others returned compound and substance information from PubChem. ????? Does this help? ????? Spencer On

Hello, All: The "writeFindFn2xls" function in the "sos" package tries to write an Excel file with 3 sheets ('PackageSum2', 'findFn', 'call'). Unfortunately, it is often unable to do this because of configuration problems that are not easy to fix. I've found 3 contributed packages that provide facilities to write Excel files with

Hello: How can one get the number of functions and data sets in a package? I've written a function "PackageSum2" to get an extended package summary for an installed package. I get much of what I want from the object returned by "help(package=pkgName)". For example, "help(pac=...)$info[[1]]" is a character vector giving author, maintainer,

Hello, All: What can people tell me about converting back slashes to forward slashes in character strings? Several years ago, Prof. Ripley provided a solution, which I lost and have not been able to find. Below please find a function to do this. I do not find this very satisfactory, however, because it uses "scan" and therefore operates on an input not a

*** *** WHAT WOULD MAKE R EASIER TO USE FOR YOU? *** The useR! 2017 conference in Brussels, July 4-7, will include a session in which attendees will be invited to offer their thoughts in at least three areas: * A common interface for similar functions. For example, John C. Nash and others have taken the lead in developing packages to provide one standard call that will

... In addition, you may wish to also post on the Bioconductor list for this sort of thing. -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu, May 3, 2018 at 12:58 AM, Spencer Graves <spencer.graves at effectivedefense.org>

In an implied call to an S3 print method, deparse(substitute(x)) returns "x", regardless of the name of object in .GlobalEnv, as indicated in the following: > Xnamed <- 1 > class(Xnamed) <- 'name.x' > print.name.x <- function(x, ...){ + namex <- deparse(substitute(x)) + cat('How can I get the name of x in .GlobalEnv?\n', +

On 9/8/2016 5:01 AM, Jonathan Baron wrote: > OK. It is sort of fixed and sort of works. > > We'll keep it for now, but this is not going to work forever. When > namazu fails completely I will not have the time to install a new > search engine. > > One option is to use google. For a site like this, I think they will > want some money, but I'm not sure, and I do not

Hello: What is the recommended procedure for skipping long tests in "R CMD check --as-cran"? Some time ago, after a discussion on this list, I added the following function to the fda package: CRAN <- function (x = "_R_CHECK_TIMINGS_") { x. <- Sys.getenv(x) nchar(as.character(x.)) > 0 } However, it does not seem to be working

Hi all, We know that Hermite polynomial is for Gaussian, Laguerre polynomial for Exponential distribution, Legendre polynomial for uniform distribution, Jacobi polynomial for Beta distribution. Does anyone know which kind of polynomial deals with the log-normal, Student抯 t, Inverse gamma and Fisher抯 F distribution? Thank you in advance! David [[alternative HTML version deleted]]

All Is there a package or library that will, given a nucleotide sequence 1. calculate the extinction coefficient at 260 nm for (Beer-Lambert's law) 2. calculate molecular weight 3. return it's complementary sequence I was able to find several packages that can do similar calculations for an amino acid sequence for proteins but none for nucleic acids. Any pointers, etc. would be

I have the data set like this: A B C D E A 2 235 327 278 2569 B 244 5 122 248 259 C 324 2235 13 98 69 D 22 23 2 7 6569 E 23 2 2 278 9 This is the interaction data between A, B, C, D, and E. How to construct a tree including A-E? -- View

I think this is probably known by someone, but I wanted to ask/comment: The 'adapt' package has been removed from CRAN because of an 'unclear' license. That makes sense, but it actually took a bit of digging for me to discover that, and if I had been a student I might not have figured it out. The package is simply missing from the CRAN compiled packages page; I did find

Hi everyone, I have a very quick question: Is there a ready-made function in R or any R packages to find the prime factorization of an integer? -- View this message in context: http://r.789695.n4.nabble.com/Prime-Factorization-tp2548877p2548877.html Sent from the R help mailing list archive at Nabble.com.

Dear colleagues. I wonder if anybody knows about a procedure in R to calculate the Berger-Parker index and the Brillouin Diversity index. I searched the net but did not find anything good about it. Thanks a lot for any help Mayo, Elvira. [[alternative HTML version deleted]]