similar to: calling a c function from R

Hello. I've just started using R and am trying to figure out if the two codes snippets below have the same output gBest<-floor(runif(popsize,min=1,max=top)) velocity[i,j]<<-.4* velocity[i,j] + 1 * runif(1) * (pbestsVar[i,j] - popVar[i,j]) + 1 * runif(1) * (archiveVar[gBest,j] - popVar[i,j]) and for (i in 1:popsize) { for (j in 1:maxvar) { gBest<-sample(top,size=1)

Hi I have a tab delimited file with fillowing content: "swissProtID" "entrezID" "bitVec" "Q62924" "---" "00000000100010000000000000000000" "P18897" "---" "00000000000001000100000000000000" "Q62736" "---"

Hi I am trying to read genbank est flat files. Is there any function in R to do that. I was looking for something similar to SeqIO.parse(input_handle, "genbank") in bioPython that convert the genebank sequence into fasta sequence. (One option is to call biopython from R but I am not familiar with python functions so I want to avoid that and I am keeping it as last resort) Thanks and

Hi Is there any function to do bitwise or/and/xor on long bit vectors? "aaaaa" "0000000000000000000000000000000000000000000000000000000000000000......................" "bbbbb" "0000000000000000000000000000001000000000000100000000100000001100......................" "ccccc"

I am using R for my bioinformatics research. I am dealing with a graph in which I need to find all possible path. I was looking for some package that solve my purpose but all in vain. There are available algorithms but most of them find shortest path that ignore other paths So I decided to write my own from scratch. I need to create a two dimensional matrix of size nXn. The element of each entry

I have a file with a data in columnar format like below: probeID rc_AI104113_at rc_AI178259_f_at rc_AI179134_i_at rc_AI179134_f_at rc_AI104113_at rc_AA819429_f_at How can I rewrite it in the format below: 'rc_AI104113_at', 'rc_AI178259_f_at', 'rc_AI179134_i_at', 'rc_AI179134_f_at', 'rc_AI104113_at', 'rc_AA819429_f_at' Is there any function to do

Hi How to access the values in the output that is an object of S4 type. I tried to access using subset ( [ ] ) but it is not allowed. Any clue?? Thanks -- Fahim #My code is as follows: require(IRanges); query <- IRanges(c(1, 4, 9), c(5, 7, 10)) subject <- IRanges(c(2, 2, 10), c(2, 3, 12)) findOverlaps(query, subject) Output of find overlap function is: ------------------ 1>

now i am using cucumber.........and i get two topic webrat and capybara........wat is the diff between them???????which one is good?????which one i use????? Regards Fahim Babar Patel -- You received this message because you are subscribed to the Google Groups "Ruby on Rails: Talk" group. To post to this group, send email to

Hi I observed an interesting behavior of R. Can you find where is the bug, or it is not a bug but made deliberately. - Hide quoted text - > arr = c(); #defined the empty array > a= c("x1", "x2"); > b = c("y1", "y2"); > arr = rbind(arr,a); #row bind the first character array -a > arr =

Hi all, Can any one tell me how to use Ajax with Rails. Send me quick start up link and videos. Thanks Regards Fahim Babar PAtel -- You received this message because you are subscribed to the Google Groups "Ruby on Rails: Talk" group. To post to this group, send email to rubyonrails-talk-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To unsubscribe from this

I recently started using ubuntu 9.10 and I am using gedit editor and R plugin for writing R code. To install any package I need to do: $ install.packages() //window pop-up for mirror selection //then another window pop up for package selection. After this as long as I am not exiting, the function of the newly installed packages are available. After I exit (i use to put 'no' in 'save

Hi Can some one please point out where i am wrong. I am trying to position set of nodes column-wise in cytoscape using RCytoscape A----D B----E C----F ------------------- g <- new ('graphNEL', edgemode='undirected') cw <- CytoscapeWindow ('smallExample', graph=RCytoscape::makeSimpleGraph()) layout (cw, 'jgraph-spring') redraw(cw) nodesFr = c('A',

Is there any function/way to merge/unite the following data GENEID col1 col2 col3 col4 G234064 1 0 0 0 G234064 1 0 0 0 G234064 1 0 0 0 G234064 0 1

Hi all, I follow All the steps for recaptcha , but i am confused how to test on my local host. Because when we register in google recaptcha it ask for domain URL, i stuck here. Q What should i enter in domain url ? Hope that you all understand the problem. Thanks Regards Fahim Babar Patel -- You received this message because you are subscribed to the Google Groups "Ruby on Rails:

hi all, has_and_belongs_to_many :cows has_and_belongs_to_many :milkmans i am using has_and_belongs_to_many in my app.I know this will create third table internally cows_milkmans in mysql database. when i migrate develpoment database i have table cows_milkmans. Good no Problem till now. Now a problem start When i migrate test database there is no such cows_milkmans table is present..

I wish to use nileshtrivedi-gupshup gem but i am getting this error. Can any one know about this? ERROR Could not find gem ''nileshtrivedi-gupshup (>= 0) ruby'' in the gems available on this machine. Thanks Fahim Babar Patel -- You received this message because you are subscribed to the Google Groups "Ruby on Rails: Talk" group. To post to this group, send email

Hi all, I read Formtastic and SimpleForm gem. I am using 3.4 Q 1 Is any one of this is by default included in Rails ? Q2 Any advantage of this gems over simple form tags ? As per my knowledge we are using form helper , but still i raised the qustion ? Thanks Regards Fahim Babar Patel -- You received this message because you are subscribed to the Google Groups "Ruby

Hi all, I read about localtunnel gem . As per my knowledge , local tunnel generate a URL , which can be used globally . I wish to use localtunnel for my knowledge. But now my question is raised . Q is we have to start rails server port 3000 on another terminal ? or localtunnel server is enough for our development server which we have already started on 3000 port ?. Q Can any one

can we write multiple background in one feature file....? can we write multiple feature in one feature file.....? -- You received this message because you are subscribed to the Google Groups "Ruby on Rails: Talk" group. To post to this group, send email to rubyonrails-talk-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To unsubscribe from this group, send email to

I am having trouble with paste function. I dont know how to proceed. I tried many options but i failed miserably. I am using a variable f1 to assign a string as below: f1=dataLine[locAffyProbeID]; ( the value of f1 is 244901_at ) Then I am using the paste function paste("set @g1=", f1); instead of getting set at g1=244901_at, I am getting set @g1=23. I am not able to understand