similar to: mhplot error with test example: "ylim not found"

Hi R-ers, I am struggling with my x-axis in a association plot. What I would like is to place the labels of the x-axis between the tick markers and normally the labels are printed at the place where the tick marker is placed. I don???t want to move the tick marker (it gives the switch between one chromosome and the next) but I just want to put the chromosome number in between the

Hello All: I was wondering why many plot options are not working with mhtplot. I could not find much info about this function on the web too. Any comments, any detailed manual ... Thanks, MJK [[alternative HTML version deleted]]

Hello, I am trying to create a simple Manhattan plot for a small list of 200 SNPs spread out in the genome in different genes. I have tried different functions (using ggplot2 and a function created by Stephen Turner, mhtplot etc.)-none of them work smoothly. Does anyone have a simple way to create the plot (not for all 22 chromosomes)- with the x axis showing the genes name and not the

R folks, I am trying to create a mhtplot plot that will alter the point size via the plot point value. The size of the point should change via a set criteria such as: if point value <10^-6 size 3x else if 10^-3> point value >10^-6 size 2x else point value >10^-3 size is x I consider myself an R newbie, and I am assuming that I could do this via some sort of function to change

Hello, I am connecting to my server through SecureCRT. Server is running Centos 4.0 I need to restart my server What is command line?> anyone knows vaneet Vaneet Sharma executive manager iDeasTank Limited an iwg business dolphins'' court po 388 valletta, m-malta/europe mobile: +356 9943 8263 skype: CALLVANEET fax: +356 9952 8888 phone: +356 9942 8888 vaneet@iwg.info call me

Has anyone done configuration of apache webserver with Tomcat 5.5.7 I cannot integrate them together?> Any help will be appreciated Regards Vaneet Vaneet Sharma executive manager iDeasTank Limited an iwg business dolphins'' court po 388 valletta, m-malta/europe mobile: +356 9943 8263 skype: CALLVANEET fax: +356 9952 8888 phone: +356 9942 8888 vaneet@iwg.info call me on

I researched on google for some time ... This is my other machine having centos 3.4 Im getting these GPG_KEY error while using Yum install httpd-devel AND Yum upgrade warning: rpmts_HdrFromFdno: V3 DSA signature: NOKEY, key ID 025e513b Error: Could not find the GPG Key necessary to validate pkg /var/cache/yum/base/packages/httpd-devel-2.0.46-44.ent.centos.2.i386.rpm Error: You may also

The connector is not loading my servlets? I am writing down my httpd.conf and workers.properties Httpd.conf LoadModule jk_module modules/mod_jk.so <ifModule mod_jk.c> JkWorkersFile /usr/local/jakarta-tomcat-5.5.4/conf/workers.properties JkLogFile /etc/httpd/logs/mod_jk.log JkLogLevel info JkOptions +ForwardKeySize +ForwardURICompat -ForwardDirectories JkLogStampFormat "[%a %b %d

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Hello, I've encountered a very weird issue with the method subset(), or maybe this is something I don't know about said method that when you're subsetting based on the columns of a data frame you can only use constants (0.1, 2.3, 2.2) instead of variables? Here's a look at my data frame called 'ea.cad.pwr': *>ea.ca.pwr[1:5,] MAF OR POWER 1 0.02 0.01 0.9999 2 0.02

Dear All, I have one centos box ( centos 4.0 ) which is connected to MSI wireless router....... And which is connected to my ISP MODEM. I incorporated wireless router so that I can use my laptop from any of my rooms. Now this Centos 4.0 box is my home server machine. The MSI Wireless Router has DHCP server enabled. Wireless router has provided each address to my machines basically internal IP

I am having this error Im using apache 2.0.46 with tomcat 5.5.4 .. Mod_jk is working fine. But my GSM modem is having problem in connecting.. RXTX fhs_lock() Error: creating lock file: /var/lock/LCK..ttyS0: File exists Any help will be great. Vaneet Vaneet Sharma executive manager iDeasTank Limited an iwg business dolphins' court po 388 valletta, m-malta/europe mobile: +356 9943 8263

Hello, I have basic familiarity with Unix but by most standards a novice. I am trying to install R on a linux machine and am following the instructions in the R install and admin guide in terms of what is required to compile the R source code. I downloaded R version 2.11.1 and extracted the files into my home directory. I realize I need a FORTRAN compiler to help with this process and have

To whom it may concern: My name is Jillian Weinfeld. I am currently and undergraduate student at New York University and working at Mount Sinai School of Medicine doing research with epilepsy patients. At the moment I am creating a manhattan plot with my data set. After reading many forums and such, I have appropriately plotted my data, however, I wanted to see how I can change the colors of the

Hello, I just installed R 2.11.0 on a 64 bit Linux machine: Red Hat Enterprise Linux Server release 5.5 (Tikanga) I am still in the learning process in terms of handling Unix and have used R on both windows and Unix before. I am wondering when running R in this linux machine is there a way to be able to see plots pop up right on the screen after using the plot() function instead of saving it

Thankx I solved the problem by removing firewall and now trying to include firewall settings step by step Vaneet -----Original Message----- From: centos-bounces at centos.org [mailto:centos-bounces at centos.org] On Behalf Of Ryan Sent: Monday, May 23, 2005 10:35 AM To: CentOS mailing list Subject: Re: [CentOS] RE: Wireless Networking > 1) I am not able to connect to my Centos Server BOX

Hello, I'm having some difficulty understanding the useage of the "dropterm()" function in the MASS library. What exactly does it do? I'm very new to R, so any pointers would be very helpful. I've read many definitions of what dropterm() does, but none seem to stick in my mind or click with me. I've coded everything fine for an interaction that runs as follows: two sets

Hello all, I am new to CentosOS. I am trying to connect Apache Webserver with Tomcat 5.5.7 using mod_jk. Well, if you go there: http://www.export4u.co.uk ( Apacher webserver is running but it is not integrated with Tomcat. ) Java , Tomcat are already installed on the my machine 1) I have installed mod_jk.so ( I put into modules directory in etc/httpd/modules/ ? Am I putting mod_jk.so in

Hello, I'm using the rmeta package to perform a meta analysis using summary statistics rather than raw data, and would like to analyze the effects in three different subgroups of my data. Furthermore, I'd like to plot this on one forest plot, with corresponding summary weighted averages of the effects displayed beneath each subgroup. I am able to generate the subgroup analyses by simply

Dear all, I have a problem with gamma regression (glm - family = Gamma) and zeros in R. The problem is the following when I try to estimate a dataset without zeros (endogenous variable) there is no problem. However, if I try to do the same with zeros I always get an error message. In STATA and MATLAB I can do a gamma regression with zeros. What could be the problem? If someone could help me I