similar to: reg: R genetics problem

-- Original Message -- From: padma@ccmb.res.in To: r-help@r-project.org Date: Wed, 23 Jun 2010 12:19:28 +0530 (IST) Subject: reg: R genetics problem Dear Sir, We need to use genetics packages at our end. We have installed R packages. When i try to choose genetics package and install, it is giving an error. Please see the attachment for the error. How can i resolve it and make it work? Thanking

I have a script running in the StatET Eclipse environment that executes the ggplot2 command qplot in a function: # Creates the plot createPlot <- function(){ print("Lets plot!") qplot(1:10, letters[1:10]) } When executing the qplot line directly, it works. When executing the script it does not open a window and it it does not plot. Is there something important I have forgotten? I

I have tried to install the "genetics" package and am getting and error. The log is below. For information, I am using R 2.10.1 on the Windows XP operating system. The mirror site I'm using is Michigan Technological University. Your help in this matter will be greatly appreciated. Murray M Cooper, PhD Richland Statistics 9800 North 24th St Richland, MI, USA 49083

Hi folks, Win 7 64 bit R 32 bit > install.packages("gregmisc") Installing package(s) into ‘C:\Users\satimiswin764\Documents/R/win-library/2.12’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- also installing the dependency ‘gmodels’ trying URL 'http://cran.ms.unimelb.edu.au/bin/windows/contrib/2.12/gmodels_2.15.0.zip' Content type

Dear R-helpers, I am developing a package named LDehatmap. It depends on the "genetics" package and includes two data files and a demo file. When I'm trying to install it, I get the following messages: * Installing *source* package 'LDheatmap' ... ** R ** data ** demo ** help >>> Building/Updating help pages for package 'LDheatmap' Formats: text html

Dear R users, I did install R. 2.0.1, and try to load "gap" package. However, below is the message shown when I did load it. Can anybody please let me know my mistakes? ---- > library() > library(gap) Loading required package: MASS Loading required package: genetics Loading required package: combinat Loading required package: gdata Error: package 'gdata' could not be

Hi All, Since I changed the gregmisc package into a bundle, I almost daily questions asking how to get the individual packages contained in the bundle. The standard example arises when someone attempts to install and then use my 'genetics' package which depends on the 'gdata' package contained within the 'gregmisc' bundle. The install succedes, but when the user does

Hi, I am trying to install the genetics package on a server with Linux, Fedora. I installed it in a PC and worked fine. In a server since I am not used with R, I am not sure what do I need to change so genetics pkg can see some package dependencies: Any suggestion is appreciated, Aldi Note: genetics expects gregmisc and mvtnorm to be installed already. gregmisc creates gdata etc dependencies.

Hi I am using oprofile 0.9.3 on xen cs 16540 on an Intel system. When I look at the top "hot" functions, I see p2m_change_type being one of the top function in xen-syms. This function is only in the svm (AMD) code and should not appear on an Intel system. I see that this function is not being clled at all when I am running my apps as I have put printk in the functions and they do

Hi, I have buit Xen (32 bit) with PAE and can start multiple Paraguests with 4 gig memory, but cannot launch a single VM with more than 4 gb memory. I would like to launch 1 VM with 30GB or so memory. Are there any config paramters like kernel,/inittrd that need to be changed. I have the ramdisk set to the initrd I used to boot xen with PAE. Thanks - padma

Hi, I just added 32GB memory in my system and wanted Xen to see that memory, so enabled PAE in xen0 and XenU. I did a make menuconfig in xen0 and xenU, then did a make in xen-unstable and a make install. Whilebooting this kernel, I get the above error PAE mode mismatch. I looked under xen/include/asm-x86/processor.h has #define X86_CR4_PAE defined and so does cpufeature.h have this defined.

Let me redirect the topic a bit. I've been considering unbundling gregmisc. The pro would be that people would find the component packages (i.e. gdata) more easily. The con is that the packages have a number of interdependencies, so you pretty much will need to get most of them anyway. As the latest gregmisc bundle contains a gregmisc package that is just a stub that depends on and loads

Let me redirect the topic a bit. I've been considering unbundling gregmisc. The pro would be that people would find the component packages (i.e. gdata) more easily. The con is that the packages have a number of interdependencies, so you pretty much will need to get most of them anyway. As the latest gregmisc bundle contains a gregmisc package that is just a stub that depends on and loads

Hi, I am trying to compile R with the command below in order to install rpy2. ./configure --prefix=/usr/local/R/R-2.9.2 --with-gnu-ld --with-cairo --with-x --enable-R-shlib However, error the I have gotten was: /usr/bin/ld: CConverters.o: relocation R_X86_64_32S against `R_FunTab' can not be used when making a shared object; recompile with -fPIC CConverters.o: could not read symbols: Bad

Hello to everyone! I have built CRAN task view for genetics. For now I have not submit it to CRAN yet and it can be accessible from: http://www.bfro.uni-lj.si/MR/ggorjan/software/R/Genetics.html http://www.bfro.uni-lj.si/MR/ggorjan/software/R/Genetics.ctv I have not submitted it to CRAN, since I would like first some opinion about it. Genetics is really so broad field that I belive one person

I am aware of the R Genetics Project that developed the R library and software called Bioconductor (http://www.bioconductor.org/ ) . How do the two relate to each other? What is the one that the other is not and vice versa? Can anybody link me to something that answers the question? -- Farrel Buchinsky, MD Pediatric Otolaryngologist Allegheny General Hospital Pittsburgh, PA

Dear R-helpers, I hope someone can help me with the following problem: I derived a variable from many others and produced data.frame: toktempo When I look at the variable name I get: names(toktempo) [1] "otok.V5" But I want the variable name to be Tempo so I googled around to find info about renaming variables. I found a webpage which seemed to indicate to me that there was a

Dear list, just to put it in a simple way: i read.csv from csv file to create a gdata then, create array gdata34 however, when making a loop for assigning gdata34[1,m]<-gdata[m,4], this is what happen gdata[1,4] 's real value is 10354, however, the gdata34[1,4] turns to be 883 then i checked the type: gdata[1,4] is integer, while gdata34[1,4] is double. Can any one give me some help

On Wed, Apr 11, 2018 at 7:38 PM, Jose Sanchez <josesanc at carc.unm.edu> wrote: > Hi Karthik > > Looking at the information you have provided me, I would like to make sure > that I?m running the right commands. > > 1. gluster volume heal scratch info > If the count is non zero, trigger the heal and wait for heal info count to become zero. > 2. gluster volume

Has something changed in R that requires an update in the genetics package by Gregory Warnes? I am using R version 2.5.0 This used to work > summary(founders[,59]) to prove that it is a genotype class > class(founders[,59]) [1] "genotype" "factor" Now when I issue the command: > summary(founders[,59]) I get: Error in attr(retval, "which") <- which :