similar to: Vegan fisher.alpha error

I have two vectors (a and b) with counts of animals and wanted to calculate fisher's alpha: library(vegan) a <- c(2043, 1258, 52, 1867, 107, 1624, 2, 157, 210, 402, 5, 107, 267, 2, 13683) b <- c(2043, 1258, 52, 1867, 107, 1624, 2, 157, 210, 402, 5, 107, 267, 2, 3000) fisher.alpha(a) fisher.alpha(b) fisher.alpha(a) gave the following warnings: > fisher.alpha(a) [1] 1.572964

Dear all, Using: library(vegan) data(BCI) mod <- radfit(BCI[1,]) mod RAD models, family poisson No. of species 93, total abundance 448 par1 par2 par3 Deviance AIC BIC Null 39.5261 315.4362 315.4362 Preemption 0.042797 21.8939 299.8041 302.3367 Lognormal 1.0687 1.0186 25.1528 305.0629 310.1281

I am trying to change this define void @main(float* noalias %arg0, float* noalias %arg1, float* noalias %arg2) { entrypoint: %0 = bitcast float* %arg1 to <4 x float>* intothis define void @main(float* noalias %arg0, float* noalias %arg1, float* noalias %arg2) { entrypoint: %0 = getelementptr float* %arg1, i64 0 %1 = bitcast float* %0 to <4 x float>* I must be close but

Hi all: I get the following error message that I am not able to resolve. Error in if (const(t, min(1e-08, mean(t)/1e+06))) { : missing value where TRUE/FALSE needed It appears right before the last data.frame statement. Below is the program that simulates data from one way random effects model and then computes normality and bootstrap confidence interval for

Please I need some help using R to analyze my data. What I would like to do is to repeat the same basic process (e.g. linear regression between wood density and distance from pith) for at least 240 data subsets within the main data-frame. Within the main data-frame, these data subsets will be defined by three variables namely,  species, individual and core (i.e. 20 species, at least 6

Hello, I have little experience with r, so I wonder if someone could help me? I need to plot a diversity measure (Fisher`s alpha) for different sites. I calculated the values using the following commands: Data(BCI) alphaBCI <- fisher.alpha(BCI) I need boxplots showing the data variation between sites. Then I tried: boxplot(as.data.frame(alphaBCI)) However, it does not appear the box plots

Hello, I have a question regarding bootstrap confidence intervals. Suppose we have a data set consisting of single measurements, and that the measurements are independent but the distribution is unknown. If we want a confidence interval for the population mean, when should a bootstrap confidence interval be preferred over the elementary t interval? I was hoping the answer would be

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On 18 Oct 2015, at 23:08, Sanjoy Das <sanjoy at playingwithpointers.com> wrote: > > Supporting only basic block level granularity for "try ranges" may not > be sufficient for Java -- if a basic block has more than one null check > in it then throwing the NullPtrException for the first null check (if > it fails) is semantically different from throwing the

Does anyone know of any programs capable of fine tuning my screen display settings? I'm using the NVIDIA drivers, and everything is slightly blurry - regardless of how much (or little) I set anti-aliasing to.

Hi, I have a S4 based package package that was loading fine on R 2.5.0 on both OS X and Linux. I was checking the package against 2.5.1 and doing R CMD check does not give any warnings. So I next built the package and installed it. Though the package installed fine I noticed the following message: Loading required package: methods Error in loadNamespace(package, c(which.lib.loc, lib.loc),

Adam Jackson (3): Death to RCS tags. Remove use of deprecated {DE,}ALLOCATE_LOCAL. savage 2.2.0 Alex Deucher (3): fix segfault from pScrn->currentMode fix the build for the non-pci-rework case (compile tested only) Fix reversed logic in SavageMapMem() Alex Villacs Lasso (1): Fix broken downscale past 2:1 - MM8190 and MM8198 can be used together for

Hi all, I was wondering if there's an equivalent to par(new=T) of the plot function in lattice. I'm plotting an xyplot, and I would like to highlight one point by plotting that one point again using a different symbol. For example, where 6 is highlighted: plot(1:10, xlim=c(0,10), ylim=c(0,10)) par(new=T) plot(6,6, xlim=c(0,10), ylim=c(0,10), pch=16) Is there a way to do this in lattice?

I won’t be able to attend, but I’d be interested in hearing if any conclusions are reached on several of these topics: > On 16 Oct 2015, at 21:27, Joe Ranieri via llvm-dev <llvm-dev at lists.llvm.org> wrote: > > - Dealing with the explosion of basic blocks that come up with > languages where almost every function call, implicit and explicit, can > raise exceptions. This

hello, could somebody refer me to the reason R uses -2*loglik + 2*(#param)+2 to calculate AIC? thank you -- Stoyan Iliev

Dear vegan team, Vegan development happens now completely in github. R-Forge repository is no more in sync with github. I tried to commit all github changes to R-Forge, but a week ago I got a conflict in file and I haven't had time to resolve that conflict. You can follow vegan development and vegan discussion also without signing to github. The system seems to be completely open and does not

Hello, This is Elaine. I am using R 3.0 to download package vegan but failed. The warning message is package ‘vegan’ successfully unpacked and MD5 sums checked Warning: unable to move temporary installation ‘C:\Users\elaine\Documents\R\win-library\3.0\file16c82da53b1b\vegan’ to ‘C:\Users\elaine\Documents\R\win-library\3.0\vegan’ I cannot find the folder \file16c82da53b1b\ below

Dear List, I can'f figure how to add point labels in the next plot (example from ?taxondive help page, from vegan package): library(vegan) data(dune) data(dune.taxon) taxdis <- taxa2dist(dune.taxon, varstep=TRUE) mod <- taxondive(dune, taxdis) plot(mod) The points in this plot are diversity values of single sites, and I'd like to add a label to each one. The plot command don't

Hi, I try to install vegan package on debian linux and I give this error: ================================================= * installing *source* package 'vegan' ... ** libs make: *** No rule to make target `cepin.o', needed by `vegan.so'. Stop. *** arch - Rgnome Warning in file(con, "r") : cannot open file '/usr/lib/R/etc/Rgnome/Makeconf': No such file or

hello, i'd be happy if someone could provide help with the following problem: i have a dist.matrix that comes from vegdist() function of the vegan package. the used method = "horn" is not accepted as argument in hvcluster(...,dist.method="..."). is there a way to incorporate the method "horn" in hvcluster()? thanks in advance! yours, kay -- View this