similar to: miss.loc function in MCMC Geneland: can't make it work

Hi all, I would like to multithread that script, to detect structure from multilocus genetic data : >library(Geneland) > >geno = read.table("cot966gen_test.txt") #the file is show after >MCMC(geno.dip.codom = geno, varnpop=T, npopmax=20, spatial = F, nit=100000, thinnin=100, path.mcmc="./") >PostProcessChain(path.mcmc="./", nxdom=100, nydom=100,

I am receiving the above error ( full r session output below) the script runs OK in windows. and "genotypes" and "ploidy" are both correct arguments any suggestions would be most welcome Nevil Amos MERG/ACB Monash University School of Biological Sciences > library(Geneland) Loading required package: RandomFields Loading required package: fields Loading required

I do the these passages: library(Geneland) set.seed(1) data <- simdata(nindiv=200, coord.lim=c(0,1,0,1) , number.nuclei=5 , allele.numbers=rep(10,20), IBD=FALSE, npop=2, give.tess.grid=FALSE) geno <- data$genotypes coord <- t(data$coord.indiv) path.mcmc <-

Hello, anybody know the procedure to plot the geneland result in a map? thank you ********************************************************** Vincenzo Landi Post Doctorate student Animal genomic and breeding cell:0039/3395388713 Fax. 075-5857122 [[alternative HTML version deleted]]

Hi , I'm currently trying to make available a few fortran subroutines and R functions (which make interface to these subroutines), as an R package. I'm doing it under linux with R 1.9.0 (but hope to do it for windows too). I have trouble for loading my fortran code. Here are the steps involved : 1) In R: # Create tree for package

I am getting the above warning following loading of Geneland 3.1.5 on unix , while a simple plot sends output to the pdf file ( see attached code) no output results from Geneland functions, resulting in empty pdf files > library (Geneland) Loading required package: RandomFields Loading required package: fields Loading required package: spam Package 'spam' is loaded. Spam version

Hi, I have a package of my own which seems to work fine under linux. I want to make a compiled version for windows. (I work with windows 2000 and R 2.0) I have followed the steps described in the file readme.packages (in the top-level directory of the binary installation) and I had a trouble at this step (which aim is not documented): C:\Program Files\R\rw2000\src\gnuwin32>make libR.a

I am trying to format data for the Geneland package I need to write a series of paired numbers and paired "000" to a plain ascii file without surrounding the numerals with quotes, the original data is in a matrix formatted paired strings, and written to file using write.table(x,"output filename",col.names=F,row.names=F) thus "77 79" "132 132" "000

Dear all I'm developing a grafical interface for Geneland that is presently one of the R packages available. My first question is about refreshing the interface while running a very long process. run<-function(){ ? ? ? ? tttry <- tktoplevel() ? ? ? ? tkwm.geometry(tttry, "+200+200") ? ? ? ? tkwm.title(tttry,"wait") ? ? ? ?

Ok. That''s probably really confusing. :) Here''s what I''d like to do. If it''s something that''s overly difficult or just plain stupid, let me know. :) I''m on cable with a dynamic IP. I have a domain forwarding account pointing to me. That is techiem2.no-ip.com. The firewall is 192.168.100.1. My web server is on port 444 on machine

Running "rake stats" shows validates_presence_of :stuff, :more_stuff, :yet_more_stuff As two lines of code (LOC). I think it should be one line of code, since it''s one statement. An easy way to do that would be to not count the lines with a comma at the end. Joe

> -----Original Message----- > From: Tom Eastep [mailto:teastep@shorewall.net] > Sent: Tuesday, May 14, 2002 1:15 PM > To: Shorewall Development > Subject: [Shorewall-devel] [Shorewall-users] Redirect loc::80 to > fw::3128 not work (fwd) > > > I''m beginning to believe that the use of the last column in the rules > file to designate redirection/forwarding is

Hello! I configured a pptpserver on my firewall and followed the pptp-manual from Shorewall. Login via VPN to firewall (internal ip: 192.168.10.2) is ok and I can ping this server via internal ip (and use it: add samba-shares, etc.). Unfortunately I can''t connect to other hosts in my intranet (LOC). Ping from vpn-client to clients in intranet fails, although Shorewall-Log shows an

Romeo Petruca wrote: > wine mysql.exe -h localhost -u root -p First of all, why are you using windows' version or 'mysql' client and not native Linux version? Romeo Petruca wrote: > i got this error: > ERROR 2005 (HY000): Unknown MySQL server host 'localhost' (10093) Most likely it's trying to use pipe and fails of course. Add '--protocol=TCP' option.

How would I use Big Brother with Shorewall and my loc and dmz zones to monitor hosts in both zones? If Big Brother''s server is on my LAN (loc) is it "safe" to forward the bb port from the dmz to the LAN? What would the security risks of this be? Common sense says that it may not be a good idea to forward stuff from the dmz to the LAN, but I''m inexperienced and unsure

BTW, it looks like LLVM has broken the 100,000 LOC mark. :) ~/llvm$ wc `utils/getsrcs.sh ` ... 100384 419463 3658827 total -Chris -- http://llvm.cs.uiuc.edu/ http://www.nondot.org/~sabre/Projects/

Dear All, With the help of Reid Spencer, UIUC CS IT support, and Patrick Jenkins, the LOC graph on the nightly tester has returned. -- John T.

Hi, is there a reason why when calling the argument 'lib.loc' of library() is not used when trying to load the required packages? 0. Package A depends on package B 1. Install packages A and B in a subdirectory 'lib' of the current directory 2. Call: library(A, lib.loc='./lib') This will give something like the following: Loading required package: B Error: package

Not sure whether it is the same issue as was raised here: https://stat.ethz.ch/pipermail/r-devel/2010-October/058729.html but in any case perhaps the problem could partially be remedied on line 245 of src/library/base/R/library.R by passing the lib.loc to .getRequiredPackages2() ...here is a patch (untested) Index: src/library/base/R/library.R

On 25.07.2018 04:00, Dario Strbenac wrote: > Good day, > > A self-contained example which reproduces the problem is > > packagesFolder <- tempdir() > latestFolder <- file.path(packagesFolder, "latest") > dir.create(latestFolder) > > devtools::create(file.path(latestFolder, "statistics"), description = list(Version = "1.1.0", Depends