similar to: GUI commands to call for a protein from protein data bank

If I have GUI as follows how can I add a checkbox that when you click on it,it gives you different files, then when you click on that file it gives you the information you are looking for, instead of me browsing for a file how do i turn it to be a csv or xls file check box. dlg <- aDialog(items=list( file=fileItem("", attr=list( filter=list("CSV or txt"=list(

hi, i'm trying to make gui function by "aDialog" FUN. What i want to do is adjusting the window size. my function is , aa<- aDialog(items=list( ps=numericItem(), number=numericItem(), term=numericItem() ), OK_handler=function(.) { # . is reference to dlg object values <- .$to_R() do.call("KOD",values) } ) how can i adjust the size of the window? Thanks~ -- View

Hi R, I have a an excel file with a lot of data. I need to create an user interface in R, which has one single screen. It needs to contain a right pane containing the click buttons for different countries (say). If the user clicks a country, then a chart needs to be created for that country, taking the data from Excel. Is this possible and which package helps me in doing this? Many thanks in

Dear all, I am looking at the R-help entry below: http://finzi.psych.upenn.edu/R/Rhelp02/archive/26640.html I have a more complicatedt problem. I have a zoo time series frame with 100+ sequences. I want to cycle through them back and forth and compare them to the 1st column at any time. I need also a button to click when I need the viewed-selected sequence (that is being compared to the

Hi, I am trying to read a SAS version 9.1.3 SAS dataset into R (to preserve the SAS labels), but am unable to do so (I have read in a CSV version). I first created a transport file using the SAS code: libname ces2 'D:\CES Analysis\Data'; filename transp 'D:\CES Analysis\Data\fadata.xpt'; /* create a transport file - R cannot read file created by proc cport */ proc

Dear Colleague, Happy New Year! As we know, codon preference among different species could be dramatically different. To enhance the expression level of a foreign protein in a particular expression system (E.coli, Yeast, Insect, or Mammalian cell), it is very important to adjust the codon frequency of the foreign protein to match that of the host expression system. One classic example is GFP

Dear Colleague, Happy New Year! As we know, codon preference among different species could be dramatically different. To enhance the expression level of a foreign protein in a particular expression system (E.coli, Yeast, Insect, or Mammalian cell), it is very important to adjust the codon frequency of the foreign protein to match that of the host expression system. One classic example is GFP

Hello!!! I have a question about clustering. I'll present my problem first. I have a simulation of a protein trayectory (a file with a time series of protein 3D-coordinates), from it I can calculate the Root Mean Square desviation (RMSD) beetween any pair of structures in the trayectory, which is a rough idea of 3D similarity beetween them. If for every conformation (trayectory frame) I

Dear R users, I would like to align two protein sequences using BLAST (bl2seq). The question is whether this programm have been implemented in R. Thank you for your help, Alla.

Dear All, I would like to generate random protein sequences using a HMM model. Has anybody done that before, or would you have any idea which package is likely to be best for that? The important facts are that the HMM will be fitted on ~3 million sequential observations, with 20 different states (one for each amino acid). I guess that 2-5 hidden states should be enough, and an order of 3 would

Dear All, I need to fetch GO ontologies for Homo sapiens with their mappings to corresponding Uniprot identifiers. I would be using this information to compare result from a clustering algorithm with existing protein complexes. This would be a test to check how the clustering algorithm accurately captures GO terms with respect to the known protein complexes. Can anyone suggest a simple workflow

I am really new with R Graphical user interfacefunctions. I am developing a software package to calculate pKa (biochemistry) but I want to make it look aesthetically pleasing and make it user friendly. I have heard that R has some GUI (Graphical user interface) and you can do some really cool stuff out there. What are the limitations and what are some resources for help. I have found a couple of

Hi everybody, I a, trying to use R as a pipe like this: cat inputData | R --silent RCommandFile >outputData The RCommandFile would contain something like readLines(stdin()). I have tryed various things and none did work cleanly. One possible solution is to use the pipe() function inside R and to pass in the "cat inputData" however this is not very convenient since I would like to

Hi all, I have R script which during its run require an input like this: choose between one of the grouping factor available : c("Village", "Country") can I automate this part, in other word to pass for example Village when I am running the script. One more thing the script is the TimeSeriesAnalysis {ndvits}. Thanks in advance for any help or suggestion. Regards, Vahe

Many thanks again for your code. Actually, manual typing of the function names to record or review plots is not a practical solution for me. I taught it would be a quick task to program Function keys for this purpose. I uselessly spent time messing with a "<home>.initrc " file. The only solution I found is to write the functions names, via Bash menu

Dear useRs, This is to announce the RGtk2Extras R package is available on CRAN in version 0.5.1. This package provides useful extras for R programmers who wish to create graphic user interfaces. It is based on GTK, using Michael Lawrence's RGtk2 package and John Verzani's gWidgets, and some ideas from John Verzani's traitr package. The first major feature of RGtk2Extras, the

Dear useRs, This is to announce the RGtk2Extras R package is available on CRAN in version 0.5.1. This package provides useful extras for R programmers who wish to create graphic user interfaces. It is based on GTK, using Michael Lawrence's RGtk2 package and John Verzani's gWidgets, and some ideas from John Verzani's traitr package. The first major feature of RGtk2Extras, the

CRAN (and crantastic) updates this week New packages ------------ * DCGL (1.0) Bao-Hong Liu http://crantastic.org/packages/DCGL Functions for basic differential coexpression analyses: gene filtering, link filtering, DCG (Differentially-Coexpressed Gene) identification and DCL (Differentially-Coexpressed Links) identification.Two algorithms,named DCP and DCe, are provided for

Dear R-helpers: thank your for your attention. i am a newer to R and i am doing some protein category classification based on the amino acid sequence.while i have some questions urgently. 1. any packages for analysis amino acid sequence 2. given two sequences "AAA" and "BBB",how can i combine them into "AAABBB" 3. based on "AAABBB",how can i get some

CRAN (and crantastic) updates this week New packages ------------ * allan (1.0) Alan Lee http://crantastic.org/packages/allan Automates Large Linear Analysis Model Fitting * andrews (1.0) Jaroslav Myslivec http://crantastic.org/packages/andrews Andrews curves for visualization of multidimensional data * anesrake (0.3) Josh Pasek http://crantastic.org/packages/anesrake This