similar to: Ruuid missing Gtk glib.dylib

Dear All, When installing the Ruuid package (from Bioconductor) from sources on my MAC (OS X 10.3.5, R version 2.0.0) I get the following errors: m00245:~ ivisser$ R CMD INSTALL -l /Users/ivisser/Library/R/library/ /Users/ivisser/Desktop/Ruuid * Installing *source* package 'Ruuid' ... loading cache ./config.cache checking for glib-config... no checking how to run the C preprocessor...

Hello ... I would like to direct people's attention to the package "Ruuid" on the Biconductor website (http://www.bioconductor.org/repository/devel/package/html/Ruuid.html). It's purpose is to generate UUID values, and has a simple R interface (currently one function: getuuid(), with multiple options). Under unix, it uses Theodore Ts'o's libuuid to create and manage

> source("http://www.bioconductor.org/biocLite.R") > biocLite(c("Ruuid")) Running getBioC version 0.1.6 with R version 2.3.1 Running biocinstall version 1.8.4 with R version 2.3.1 Your version of R requires version 1.8 of Bioconductor. trying URL 'http://bioconductor.org/packages/1.8/bioc/src/contrib/Ruuid_1.10.0.tar.gz' Content type 'application/x-gzip'

Hello, I work with two packages sna and graph from CRAN resp. Bioconductor. Both packages have a function called "degree". Therefore one of the functions is masked by the other and which one gets called depends on the order of loading. The problem is that both package do not have a namespace, therefore calling the masked function with "package::degree" does not work.

I'm trying to sort out some best practices for package development and understand some behavior of R CMD check that has me confused. Best practice question: If a package foo appears in the Depends field in the DESCRIPTION file of mypkg, should I refrain from using require(foo) in the R source files of mypkg? The Writing R Extensions manual says this about the Depends field: ... the

I have developed a problem with the postscript output of plot on Windows. My code still works properly with R 2.3 but, with R 2.4, the white text on red background does not show up. It does, however, show up when output is sent to the screen. Below is my code and sessionInfo. R version 2.4.0 Under development (unstable) (2006-08-29 r39012) i386-pc-mingw32 locale: LC_COLLATE=English_United

Hi again, I have been playing around with the order of loading packages, and as far as I can tell, there's nothing specific with affycoretools that's causing my Rgui to crash (i.e., shuts down and the Microsoft 'please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by

"btrfs subvolume list" gets a new option "--fields=..." which allows to specify which pieces of information about subvolumes shall be printed. This is necessary because this commit also adds all the so far missing items from the root_item like the received UUID, all generation values and all time values. The parameters to the "--fields" option is a list of items to

Is there a way to do this? I tried x <- writeBin(pi, raw()) dump("x","x.R") source("x.R") but is seems x.R is not source()-able, as it contains an unexpected symbol. Thanks Ben

Hi How do I install "gregmisc" packages? I did- % sudo R > install.packages("gregmisc") . . > barplot2() but, Error: couldn't find function "barplot2" -- atuya Mac OSX 10.2.6 R 1.7.1

Hello, I am relatively new to R and would like to access the document my pointer is pointing to in the following line of code. Need some help. #install.packages('xml2') library('xml2') pg1 <- read_html("www.msn.com") str(pg1) ptr <- pg1[[2]] [[alternative HTML version deleted]]

Dear R-helpers, Can anyone tell me how to fix this: > library(Rgraphviz) Loading required package: graph Loading required package: Ruuid Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/Library/Frameworks/R.framework/ Resources/library/Rgraphviz/libs/ppc/Rgraphviz.so': dlopen(/Library/Frameworks/R.framework/Resources/library/Rgraphviz/

> From: Gabor Grothendieck > > Dirk Koschuetzki <dkoschuetzki <at> gmx.de> writes: > > : > : Hello, > : > : I work with two packages sna and graph from CRAN resp. > Bioconductor. Both > : packages have a function called "degree". Therefore one of > the functions > : is masked by the other and which one gets called depends on >

Dear r-helpers, Can anyone suggest a remedy to the following failure of Rgraphviz to load? > library(Rgraphviz) Loading required package: graph Loading required package: Ruuid Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/Library/Frameworks/R.framework/ Resources/library/Rgraphviz/libs/ppc/Rgraphviz.so':

Is there any good source of information on how S4 classes (and methods) work from C? E.g., for reading how to read a slot value how to invoke a method how to test if you have an s4 object For writing, how to make a new instance of an S4 object. I've found scattered hints in the archive, including a link to a talk on this subject "I am using C code to create an S4 object based on

Hello R community, I am processing raw Affymetrix CEL files and I am using the Michigan custom CDF library hgu133plus2hsentrezgprobe. I have been looking for documentation on the function that it contains...I am specifically interested in converting probe names to gene symbols. Does anybody know where I can find it? Thank a lot! Eleni [[alternative HTML version deleted]]

> On Jun 22, 2017, at 12:52 PM, Lawrence Fomundam <lawfom at gmail.com> wrote: > > Hello, > > I am relatively new to R and would like to access the document my pointer "my pointer"? > is pointing to in the following line of code. Need some help. > > #install.packages('xml2') > library('xml2') > pg1 <-

I am trying to use a custom S4 object in my C code and I cannot get the access to its slots working. The following is a toy example, but even this crashes. In R I have: setClass("pd", representation(data="numeric")) x <- new("pd", data=1:5) test <- function(pd.obj) { res <- .C("TestFun", pd.obj) res} test(x) (Of couse

Hi - I am not familiar with R. Could I ask you a quick question? When I read a file like this, I get an error. Not sure what I am doing wrong. I use a MAC. How do I specify a full path name for a file in R? Or do files have to reside locally? > KoreaAuto <- read.table(""/Users/ raviramaswamy/Documents/Rutgers/STT 586/HW1 Data.txt"") Error: unexpected numeric

>I just installed bioconductor via getBioC.R but there >is 3 problems: apparently some libraries are missing >and I don't know which one, and even the XML package >add a error message like : >1:Installation of package Rgraphviz had non-zero exit >status in: installPkg(fileName, pkg, pkgVer, type, >lib, repEntry, versForce) >2:Installation of package rhdf5 had non-zero