similar to: BRugs in Linux?

Frank (or anyone else), can you offer any comments comparing runjags, R2jags, rjags ? I couldn't find any vignettes, nothing except a brief mention on Task Views. Kevin On Wed, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu > wrote: > Have you tried the rjags package which uses the jags system? It is much > more integrated into R and works quite well.

Hi, Here is a step-by-step guide to exactly how I've installed R in Ubuntu: http://www.nabble.com/installing-R-on-Ubuntu-td10025949.html#a21894865 Regarding rjags, here is what happened: This webpage (http://yusung.blogspot.com/2009/01/install-jags-and-rjags-in-fedora.html) recommends logging into R as sudo R, and then typing: install.packages("rjags",

i am having problem running my own data. yesterday it was working just fine. today it is not. this is the code i was using as an example to follow. this code ALSO worked just fine yesterday, and is no longer working at all. i suspect it is a problem with either my computer or the software, at this point. if THIS won't even run.... something is wrong. i can assure you this isn't

I have been having trouble with rjags on Ubuntu 10.04 > library(rjags) Loading required package: coda Loading required package: lattice linking to JAGS 3.2.0 module basemod loaded Error : .onLoad failed in loadNamespace() for 'rjags', details: call: dyn.load(file) error: unable to load shared object '/usr/lib/JAGS/modules-3/bugs.so': /usr/lib/JAGS/modules-3/bugs.so:

Hi, With the sid package jags (2.0.0-1) and r-base-core (2.11.0-1), I cannot install package rjags anymore (this used to work at some point; can't recall exactly at what R/JAGS versions): ---<--------------------cut here---------------start------------------->--- R> install.packages("rjags", configure.args="--with-jags-modules=/usr/lib/JAGS/modules-2.0.0")

Hello folks Earlier versions of jags and rjags installed on my system without any difficulty, but I'm having trouble with jags version 4.3.0-1ubuntu2~ubuntu14.04.1~ppa1 (from Michael Rutter's R ppa) and rjags version 4.6. The call to install.packages() I always used successfully now produces the error "cannot link to JAGS library in /usr/lib/x86_64-linux-gnu."? shown below

Hi All, I am trying to figure out how to use R-Coda with the output from OpenBugs. I have installed and loaded the packages BRugs and R2WinBUGS. I have successfully run a simple Bayes model in WinBUGS using R2WinBUGS' "bugs" and have used "read.bugs" to build the coda object. I can successfully switch to OpenBugs and run the same model and get the basic summary

Hello, I recently changed from Win XP to Mac OS X (10.5.1). Is there a way to run Bugs (in any version) in R (R version 2.6.0 (2007-10-03)) on this platform? Fredrik

I've not been able to install rjags successfully in Ubuntu 10.04 : ** testing if installed package can be loaded Error : .onLoad failed in loadNamespace() for 'rjags', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared library '/home/scott/R/i486-pc-linux-gnu-library/2.11/rjags/libs/rjags.so': libjags.so.2: cannot open shared object file:

Dear all, I'm not 100% sure if this question is best directed at the r-list, or a mailing list concerned with Bayesian analysis, so please accept my apologies if another audience may be more appropriate. I have been using the rjags package to run Jags models with multiple chains and store the results in a Coda based mcmc list. For instance, having created a jags model and done initial

While I have been able to install rjags on my Windows computer, oddly I have been unable to install rjags successfully on my 64-bit Linux compute server (etch, Linux kernel 2.6.18). I am required to specify the JAGS module directory upon installation; when doing this within R, I get:

Deal all, as MCMClogit does not allow for the specification of several chains, I have run my model 3 times with different random number seeds and differently dispersed multivariate normal priors. For example: res1 = MCMClogit(y~x,b0=0,B0=0.001,data=mydat, burnin=500, mcmc=5500, seed=1234, thin=5) res2 = MCMClogit(y~x,b0=1,B0=0.01,data=mydat, burnin=500, mcmc=5500, seed=5678, thin=5) res3 =

Hi, A question. When I run gelman.diag and gelman.plot with mcmc lists obtained from MCMCregress, the results are following. > post.R <- MCMCregress(Size~Age+Status, data = data, burnin = 5000, mcmc = 100000, + thin = 10, verbose = FALSE, beta.start = NA, sigma2.start = NA, + b0 = 0, B0 = 0, nu = 0.001, delta = 0.001) > post1.R <- MCMCregress(Size~Age+Status, data

Trying to install latest rjags (3-5) from CRAN with JAGS 3.2.0 installed on Ubuntu 10.04, with r-devel ... the bottom line is that it fails while loading with /libs/rjags.so: undefined symbol: _ZN7Console15checkAdaptationERb Has anyone else seen this or is it a glitch somewhere in my system? thanks Ben Bolker ================== bolker at ubuntu-10-new:~/R/pkgs/rjags$ jags Welcome to

Hi, I'm trying to install rjags and R2jags with R version 2.14.1 (2011-12-22) on Linux Mint 12 machine using software repository: deb http://cran.fhcrc.org/bin/linux/ubuntu oneiric/ jags seems to install OK, but rjags gives a weird error about not finding fprec symbol. Here is a history of the problem including several attempts to work around it. (Because of Ben Bolker's recent

Greetings, I wonder if anyone can offer any help or advice--even direction to an appropriate source of advice. I am trying to install rjags 1.0.1 on Mac OS X 10.5 (see http://www-fis.iarc.fr/~martyn/software/jags/). I have R.app 2.6.1 installed. JAGS 1.0.1 is apparently successfully installed. I (think I) know this because when I type 'jags' into Terminal, I get the following:

Within an R session, type Sys.getenv() will list all the environment variables, but each one of them occupies about a page, so scrolling to find one is difficult. Is this because I don't know how to use it or something could be improved? Usually I'm not sure the exact name of a variable but want to look it up. Recently I installed rjags, with the JAGS-3.4.0's lib, include, modules

May I request that Dirk's package for jags be added to the CRAN archives for Debian and Ubuntu? Installing the rjags package for R requires specific versions of jags to be present on the system. The current version of rjags requires jags version 2.2.0 or later but the version on the Ubuntu archives at Canonical (i.e. not the CRAN archives) is 2.1.0-2 I can always install Dirk's package

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 While I'm not an R expert, I have used R on Windows XP. Now I've moved to Ubuntu (Intrepid), and I'm trying to configure R to work with the Gelman and Hill _Data Analysis Using Regression and Multilevel/Hierarchical Models_. So far, it's not working. I start by following the instructions for installing arm and BRugs at

Recently installed 2.12.1 on my CentOS 5.5 box. Install of R went without incident, and packages downloaded and compiled fine. With one exception -- my interest is somewhat in the problems with this particular package, but more in terms of 'what to do if/when a package' doesn't compile properly. The offending package (in this instance) is rjags. When I try to install it using