similar to: Help needed to compile R with shared library.

Hi Tena, I recommend rapache for building websites with R. See http://biostat.mc.vanderbilt.edu/rapache/ -Ista > ---------- Forwarded message ---------- > From: "Tena Sakai" <tsakai at gallo.ucsf.edu> > To: <ted.harding at manchester.ac.uk>, <r-help at r-project.org> > Date: Tue, 28 Apr 2009 15:04:53 -0700 > Subject: Re: [R] Newbie R question PART2 >

Hi, I installed R 2.9.0 a couple of days ago on a linux machine. At the root of installation, I see 4 directories: bin, lib64, share, and src. I don't see libR.so anywhere. (In the following context, . (dot) indicates the root of my insta- llation.) I do see: ./lib64/R/lib/libRblas.so ./lib64/R/lib/libRlapack.so I became aware of such as I was preparing for an installation of little r.

Hi Ian, Per your suggestion, I reinstalled R 2.9.0, then I reinstalled ggplot2 on top. The problem persists. Here's the what happens after the installation: > qplot (carat, price, data = diamonds, alpha = I(1/10)) Warning message: In grid.Call.graphics("L_points", x$x, x$y, x$pch, x$size) : semi-transparency is not supported on this device: reported only once per

Hi, I am playing with hwriter examples given in "example" page. Here's what I've done: > library (hwriter) > > p = openPage ('table.html') > hwrite (1:5, p) > hwrite (iris[1:3, 1:3], p, row.bgcolor='#ffdc98') > closePage (p) > > browseURL('table.html') What I get is not as nice as what I see via the "example" page. I

Hi, I am having a problem with installing Rmpi package on redhat linux machine. The R I am using is version 2.10.1. Here’s what happens. > install.packages( ''Rmpi'' ) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL ''http://cran.cnr.Berkeley.edu/src/contrib/Rmpi_0.5-9.tar.gz'' Content type

Hi, I am a newbie with R. My environment is linux and I have a file. I call it barebone.R, which has one line: cat ('Hello World!\n') I execute this file as: R --no-save < barebone.R And it does what I expect. What I get is 20+/- lines of text, one of which is 'Hello World!'. How would I go about getting rid of all but the line I am after, 'Hello World!'?

Hi Everybody, I am having a problem with loading Biobase package. I typed 2 lines below at R prompt > source ("http://boconductor.org/biocLite.R") > biocLite (lib="/usr/local/lib/R/library") which attempted to install a bunch of packages with varying degree of success. Out of 29, 13 failed. Biobase is one of them. As a matter of fact, when I looked at logs, most

Hi, Suddenly, I find my little r is sick. Given: #! /usr/bin/env r library (hwriter) unlink ('tmp.html') p = openPage ('tmp.html') hwrite ("Hello World", p) closePage (p) browseURL ('tmp.html') It worked fine a few days ago, but now it says: r: error while loading shared libraries: libR.so: cannot open shared object file: No such file or

Hi Everybody, I made R (v. 2.11.1) from source with the following config option: ./configure --prefix=/mnt/ami-centos5.5-64bit-base \ --exec-prefix=/mnt/ami-centos5.5-64bit-base \ --with-tcltk All seemed to go well, but when I tested it with: /usr/sbin/chroot /mnt/ami-centos5.5-64bit-base R It told me: /bin/R: line 217:

Full_Name: Luca Barbato Version: 2.3.1 OS: Gentoo Linux/PPC Submission from: (NULL) (151.44.163.144) system informations Portage 2.1 (default-linux/ppc/ppc32/2006.0/G4, gcc-4.1.1, glibc-2.4-r3, 2.6.17-rc5 ppc) ================================================================= System uname: 2.6.17-rc5 ppc 7447A, altivec supported Gentoo Base System version 1.12.1 distcc 2.18.3

Hi, I've been trying to get a shared library version of the R package(version 2.12.1) installed on a CentOS 5 system. (It installs fine without but other packages demand shared libs - namely Rapache). I've tried this with yum but don't know of any flags to set to tell it to installl with shared libs enabled. I then tried a local R install as non-root with source packages: after

Hi, I am trying to compile R with the command below in order to install rpy2. ./configure --prefix=/usr/local/R/R-2.9.2 --with-gnu-ld --with-cairo --with-x --enable-R-shlib However, error the I have gotten was: /usr/bin/ld: CConverters.o: relocation R_X86_64_32S against `R_FunTab' can not be used when making a shared object; recompile with -fPIC CConverters.o: could not read symbols: Bad

Hi, I need a bit of help installing Rpad. My host runs redhat linux and I followed the instruction given in http://www.rpad.org/Rpad/ServerNote.html. I was clear for the most part. But I don't know what's going on with the last step: To update the javascript database for the R keyword search page (SearchRKeywords.html), source makeHelpTemplate.R from within R in the main Rpad

Hello, I am trying to build R-1.3.1 on hpux10.20 with gcc and HP's fort77. here is my configure: ./configure --prefix=/home/absd00t/local --with-readline --with-gnome=no --with-f77=fort77 I also set CXXFLAGS= -I/usr/include/Motif1.2 -I/usr/include/X11R6 -I/home/absd00t/local/include and LIBS= -L/home/absd00t/local/lib so that readline.h and libs would be found. I have parts of gnome libs so

Hmnnn... This is the third version of R I have installed and I am stumped on this one. There is some unresolved external I cannot find... /opt/SUNWspro/bin/cc -v -o R.bin CConverters.o Rdynload.o RNG.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o devPS.o devPicTeX.o deparse.o

I haven't been able to build yesterday's R-devel (or, as a test, R-devel_2005-03-11) on Windows XP. The error message I'm getting is to do with 'arithmetic.c', as shown below. Current R-patched seems to build fine, and I've built previous R-devels from source fairly often in the past-- though I have no understanding whatsoever of what's going on. FWIW the only changes

Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o

Hello folks, I am having a problem installing pbatR package. (My R version is 2.8.1.) As I execute a command > install.packages(lib='/usr/local/apps/R-2.8.1/lib64/R/library', "pbatR") it detects lack of rootSolve package and attempts to install it. But cannot seem to compile it, and the rest is aborted. Any hint as to what I can do? Thank you in advance for your

Hi all, Sometimes the process cdrommon use 99,8% of CPU and the result is that all vms becames very slow. I killed the process and now everything is fine but I can''t live migrate VMS. I found this problem also in this citrix thread: http://forums.citrix.com/thread.jspa?messageID=1475962 <http://forums.citrix.com/thread.jspa?messageID=1475962&tstart=0#1475962>

Hello, I am new in R and I am delighted with it, so I am trying to bulid R-1.3.0 from sources under HP-UX 11.00 using f2c and X11 support. Configuration phase is OK but using make I have errors: gcc -Wl,-E -o R.bin CConverters.o Rdynload.o RNG.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o charac ter.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o