similar to: RMySQL compile

Hi, I am compiling R2.8.1 on a Sun M4000 machine with Solaris 10. I am using Sun Studio 12. I get the following error: cc -xtarget=native64 -G -L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9 -o grDevices.so chull.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o mkdir ../../../../library/grDevices/libs Warning in solve.default(rgb) : unable to load shared library

I am trying to install RMySQL on OpenSolaris and need to pass some options to configure. Tried the 3 recommended ways of doing it and nothing works, configure cannot find the headers and the libs. I ran configure manually and that worked fine ./configure CC=cc CFLAGS="-dalign -KPIC -xlic_lib=sunperf" LDFLAGS="-L/usr/sfw/lib -L/usr/lib -L/usr/local/lib

Hello, I tried to compile v2.3.1 on Solaris x86 with SUN Pro compilers. I had an error while stats libarary was being compiled and I notice that "-xtarget=generic64" was not passed to f95 while cc used it. Could you tell me how to fix this problem? f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c sgram.f -o sgram.o f95 -PIC -O -I/mounts/devel/SUNWspro/prod/include -c

I am moving my first steps in writing and compiling C code and calling it from R. (I am also new to shared libraries...) My problem is that my C code uses a C function contained in another library (".a", not ".so" - is that the problem?). This is how I compile the file with the functions I want to call from R: cd /export/home/gpetris/ R SHLIB tryit.c cc

I have just installed R 1.9.1 on an old Sun Sparc with the following specs: version Machine hardware: sun4u OS version: 5.6 Processor type: sparc Hardware: SUNW,Ultra-4 The following components are installed on your system: Sun Visual WorkShop C++ 3.0 Sun WorkShop Compiler C 4.2 Sun WorkShop Compiler C++ 4.2 Sun WorkShop Tools.h++ 7.0

Hello, I have updated my OS from Solaris 2.7 to Solaris 2.8, and I am trying to build R 1.9.1. Configure seems to run fine, resulting in the message: R is now configured for sparc-sun-solaris2.8 Source directory: . Installation directory: /usr/local C compiler: cc -xO5 -dalign -xlic_lib=sunperf C++ compiler: CC -xO5 -dalign Fortran compiler:

Full_Name: rodney sparapani Version: 1.9.0 OS: Solaris 9 Submission from: (NULL) (141.106.120.97) I'm following the instructions for the Sun Forte compiler. I had success with 1.8.1 so I think the compiler settings are correct (config.site): CC="cc -xarch=v8plusa" CFLAGS="-xO5 -xlibmil -dalign" F77="f95 -xarch=v8plusa" FFLAGS="-xO5

Hello, Apologies for the post here. I have read the R-Admin (learned a lot!) and searched the web for days, but still fail at compiling R on my Ultra 20 running solaris 10 x86 1/06. This is the tail of './configure' output: ..... checking for dlopen in -ldl... yes checking readline/history.h usability... no checking readline/history.h presence... no checking for readline/history.h... no

Hi, I receive the following error while I try to install rgl package: CC -xtarget=native64 -I/opt/R-2.8.1/lib/R/include -I/opt/SUNWhpc/HPC8.1/sun/include -DHAVE_PNG_H -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/sfw/include/freetype2 -I/usr/sfw/include -Iext -I/opt/SUNWhpc/HPC8.1/sun/include -I/usr/sfw/include -I/opt/csw/include -KPIC -O -c Background.cpp -o Background.o

Dear All, I am building R-1.3.1 on Solaris 2.7 and I am trying to use the native SUNperf BLAS/LAPACK. I have added the flags ("-dalign -xlic_lib=sunperf") for the compilers in the config.site file. What is not clear to me is what I have to do with the "--with-blas" flag for ./configure. It seems to me that omitting it is not enough. Any suggestions? Another question, I

Hmnnn... This is the third version of R I have installed and I am stumped on this one. There is some unresolved external I cannot find... /opt/SUNWspro/bin/cc -v -o R.bin CConverters.o Rdynload.o RNG.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o devPS.o devPicTeX.o deparse.o

Hi, After reading some of the posting in this list, I came across this posting from: From: Peter Dalgaard <p.dalgaard_at_biostat.ku.dk> Date: Fri 29 Oct 2004 - 08:02:40 EST Replying to Re: [R] Errors during make check He described a problem similar to mine, that build 64-bit R (I am building R version 2.0.1) with sunperf library gives a core dump during make check. So I configured my

System details: -------------- Sun Blade 1000, Solaris 8, Sun ONE Compiler Suite (rebranded Forte 7), R versions 1.6.0 and 1.6.2 - suspect others are affected, too Problem description: ------------------- Using the recommended env var setting from p.15 of the Admin Guide, the configure script fails the sgemm sunperf test, even though the sunperf libraries are available Not linking with

This is a little success story about the benefits of changing the defaults in config.site when I was building R-1.4.0 for Solaris (on a Sun Sparc that I'm currently using). For previous versions of R, I had just used the default config.site and not given it any thought. Since the Sun machine that I'm using is not getting any faster, I decided I would give config.site a look when building

Hi! I'm trying to compile R (32-bit) on Solaris 10 x86 using Sun Studio 10 + Sun Perflib (for BLAS and LAPACK) but encountered issues with undefined symbol "bratio". Appreciate any help. Compiler options (from configure output): ============================================== R is now configured for i386-pc-solaris2.10 Source directory: . Installation directory:

I am attempting to analyze Affymetrix exonchip data using the exon map package. I have installed this package but have had problems installing the associated programs, specifically RMySQL since no windows binary exists. I have followed the directions for compiling the package as found on - http://biostat.mc.vanderbilt.edu/wiki/Main/RMySQL - but still have an error when executing the

Dear Group, I'm having lots of problems getting RMySQL on a 64 bit machine. I followed all instructions available but couldn't get it working yet! Please help. See the output below. I did a install of RMySQL binary from the revolution cran source. It seems to have unpacked fine but gives this error when I call RMySQL Error: package 'RMySQL' is not installed for 'arch=x64'

Full_Name: K?re Jonsson Version: 2.10 OS: WinXP Submission from: (NULL) (85.225.178.169) I made a brand new installation of R 2.10 in two machines and got the same problem. Machine 1 is Win XP on metal installation machine 2 is virtual in VMWare running a hacky OS named Tiny XP in which any Microsoft windows XP siftware always successfully is installed. Operation 1. Add package RMySQL from

Hi, Could you help me to install the rgl package on Solaris 10 x86? I tried and got the following error messages. When I compiled my R as 64bit, I used the SUN ProW compilers. However, gcc seems to being used below as well as missing some information. Thank you in advance, Dongseok > install.packages("rgl") --- Please select a CRAN mirror for use in this session --- *

Hi, I'm trying to install RMySQL and I keep hitting errors. My computer is: uname -a Linux cricket 2.6.18-92.1.22.el5PAE #1 SMP Tue Dec 16 12:36:25 EST 2008 i686 i686 i386 GNU/Linux I have set the following environment settings: export PKG_LIBS="-L/usr/lib/mysql -lmysqlclient" export PKG_CPPFLAGS="-I/usr/include/mysql" I run the following command: R CMD INSTALL