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...the same data. The dataset is small (n=6) and was arranged so that the data from the two different years was arranged in two columns ("2010", "2011). I've pasted the rest of the code below for reference. I'd appreciate any suggestions as to what the issue here is! Thanks, Varina transect=read.csv("Transect data.csv") attach(transect) replicates=c(1,2) yearfactor=as.factor(replicates) yearframe=data.frame(yearfactor) yearbind=cbind(transect$TP10, transect$TP11) yearmodel=lm(yearbind~1) rmanova=anova(yearmodel, idata=yearframe, idesign=~yearfactor) summa...