search for: utr

...e in the variables # is the length of the data.frame. # Can anyone suggest what I am doing wrong or am I just misunderstanding what # a function is supposed to do? #Example: adjusts <- c(.50, .70, .29, .27 , .40 , .26 , 125) coal <- 1:6 newdata <- 1:10 fuel.costing <- function(fuel, utr, mydata) { cppf <- cppm <- fuel ; cppf[2] <- fuel[2]*(1-utr[2])*length(mydata) + utr[7]* utr[2]*utr[5] ; cppf[4] <- fuel[2]*(1-utr[4])*length(mydata) + utr[7]* utr[4]*utr[6] ; cppm[2] <- fuel[2]*(1-utr[1])*length(mydata) ; cppm[4] <- fuel[2]*(1-utr[3])*length(mydata) } fuel.costi...

...w can I use ddply more efficiently? Longer: Here's more info: * The data.frame itself ~ 15.8 MB when loaded. * ~ 400,000 rows, 8 columns It looks like so: exon.start exon.width exon.width.unique exon.anno counts symbol transcript chr 1 4225 468 0 utr 0 WASH5P WASH5P chr1 2 4833 69 0 utr 1 WASH5P WASH5P chr1 3 5659 152 38 utr 1 WASH5P WASH5P chr1 4 6470 159 0 utr 0 WASH5P WASH5P chr1 5 672...

...nter, regenerating if necessary' if (length(theta)) { if (.Call(isNullExtPtr, Ptr)) initializePtr() } Ptr }, ## ditto initializePtr = function() { Ptr <<- .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind, RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta, u0) ... } merPredDCreate in turn just copies the relevant bits into a new C++ class object: /* see src/external.cpp */ SEXP merPredDCreate(SEXP Xs, SEXP Lambdat, SEXP LamtUt, SEXP Lind, SEXP RZX, SEX...

Hi all, I have developed a full featured Windows IAX phone based on LIBIAX library . It is now in a prerelease version (0.9.0) and you can download it for free from my web page: http://www.laser.com/dante or http://www.geocities.com/tdanro Some of the features are: - registering with Asterisk PBX; - can use any audio device as ring device (including PC speaker), independent of the play device;

...double-stranded DNA specific 5'-3' exodeoxyribonuclease activity 09127-GOTERM 'de novo' actin filament nucleation 09180-GOTERM 5'-tyrosyl-DNA phosphodiesterase activity 09282-GOTERM deoxyribonucleoside 5'-monophosphate N-glycosidase activity 09330-GOTERM 3'-UTR-mediated mRNA stabilization 09355-GOTERM histone pre-mRNA 3'end processing complex which has two tab-delimited columns. I used read.table("",as.is=TRUE) and ended up with fewer lines so I have to use quote="" which also works if any line contains only a singe double (&...

...tomic [1:45000] 0.0428 0.0423 0.0554 0.0338 0.0345 ... ..- attr(*, "Size")= int 10 ..- attr(*, "Region")= chr "EXON" I create instances of this class by doing something like this: ans <- structure(x,class="myObj", Size=length(i), Region=attr(x,"UTR")) where x is a vector of reals. When I subset it via ans[c(2,3,4),c(2,4,8)] I get the result I want (my subsetting works as if its a two dimensional object for reasons I'll omit since I don't think its pertinent to the problem). I've written my subsetting code in C, so my R fu...

...re my data: "Our data are consistent with those obtained using microarray comparative genome hybridization in that we found significantly fewer variants per Mb on the X compared to the autosomal chromosomes (152 versus 336 respectively, G = 93.4, P < 2e-16, df = 1), and in exons (including UTRs) compared to non-exonic regions (69 versus 392 respectively, G = 14,226, P < 2e-16, df = 1)." How do I have to write the input? Should I have to include any total number (in this case Mb) minus the variants? g.test(rbind(c(152,(999848)),c(336,(999664))), correct = "williams") o...

Hi, I can run the code some days ago . But cant run now.  Problem 1: Output is ok ensembl = useDataset("hsapiens_gene_ensembl",mart=ensembl) utr5 = getSequence(chromosome=3, start=185514033, end=185535839, type="entrezgene",seqType="5utr", mart=ensembl)  Output :                                                                                                5utr  entrezgene                                                ...

Hello, I am new to R and still feeling my way thru it. I am trying to plot the values from this file below on the X-axis of a plot. I have attached the graph to the email...the one i am trying to recreate. Exon start end 5'UTR 22540060 22540121 1 22540122 22540140 2 22540303 22540493 3 22541552 22541565 4 22542373 22542519 5 22544265 22544432 3'UTR 22544433 22544856 I would like to create small rectangles on the x-axis as colored boxes from start position to end position of each exon...with the label showing 1, 2 e...

...bstitute(ex), parent.frame()) 11: foreach(chr = chrs, .packages = "GenomicFeaturesX", .verbose = TRUE) %do% { .gc <- duplicate(gcache, pre.load = NULL) on.exit(dispose(.gc)) cat("===", chr, "===\n") \ apaSummary(expt, .gc, chr, pvd.policy, utr.index, polya.variants, gene.collapse) } 12: apaSummaryCrank(bpm[[1]], gcr, chrs[21:22], gene.collapse = "longest") Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace ============= sessionInfo...

...A specific 5'-3' exodeoxyribonuclease activity > 09127-GOTERM 'de novo' actin filament nucleation > 09180-GOTERM 5'-tyrosyl-DNA phosphodiesterase activity > 09282-GOTERM deoxyribonucleoside 5'-monophosphate N-glycosidase activity > 09330-GOTERM 3'-UTR-mediated mRNA stabilization > 09355-GOTERM histone pre-mRNA 3'end processing complex > > > which has two tab-delimited columns. I used read.table("",as.is=TRUE) and ended up with fewer lines so I have to use quote="" which also works if any line contains on...

...livse7+fWxghD+YNJJ1tg1PeeOoVP09aJAVv398IAYExCqRGyFQ1T2 t0NvoNVG4YiV7RLbI8hnMdituBwmPv412EE/Cbb/c3Y5u5bNcOOgke7Z/DetSIs7C8oN0DM3 bZPCIHEmEw0Ifzl1YoCp4a7B5CCDfvL0uKa+m+jakGfWJl0TpAGEwHCbU81+VRrzJPEk+GfO FEezjJSmpyabyGATpB6ryr5rPGUpCnOpU5KnIR7xZFHHkIhw+seZci1vmRz0bjEB1gRcNNYv BSRtMhrEWyxFD9WwYD8D7yVWp+uTR+LS1VYLHvaqU09ICdp0qwXs9DXuNjv23IkzF2fnvLNT 5y9dPX8pP/Px7CcZ7+1cbiZ/OT+XZ5H9q5MZb2Ts1ZEx72xuenpqZibjnZ6/Ojszlct2Mr6w 33FXLpNNnCx9GHDt+jLJ8JTkwjPnuoXAu/KlhWDwmSUTvcsksoZXn4me4ohbG7A03Nyh1KI7 UErMd7dHEUev4ousOQerrq9skCzmM9YnO0RVG3tsUtRBsmwNehtSLyCLSkKJtuKJNjemShan StJfbB/+SfxF9pH2j7W3fMw91lqxYuqgIVo/W...

...7 8 9 ... .. .. .. ..@ Dim : int [1:2] 4 20 .. .. .. ..@ Dimnames:List of 2 .. .. .. .. ..$ : chr [1:4] "S1" "S2" "S3" "S4" .. .. .. .. ..$ : NULL .. .. .. ..@ x : num [1:20] 1 1 1 1 1 1 1 1 1 1 ... .. .. .. ..@ factors : list() .. ..$ Utr : num [1:4] 1260 1211 1226 1279 .. ..$ V : num [1:20, 1:4] 1 1 1 1 1 1 1 1 1 1 ... .. ..$ VtV : num [1:4, 1:4] 20 0 0 0 10 10 0 0 10 5 ... .. ..$ Vtr : num [1:4] 9963 4962 4941 2505 .. ..$ X : num [1:20, 1:4] 1 1 1 1 1 1 1 1 1 1 ... .. .. ..- attr(*, "dimnames&quot...

Javier, Creo que aquí aplica la ley de Linus que dice: "Dado un número suficientemente elevado de ojos, todos los errores se convierten en obvios". La persona que revisa y encuentra un error no necesariamente tiene que ser la misma que la que lo escribe. Una motivación muy importante al compartir un código es la de recibir los beneficios del control de calidad por parte de tus pares.

...: int [1:2] 4 20 > .. .. .. ..@ Dimnames:List of 2 > .. .. .. .. ..$ : chr [1:4] "S1" "S2" "S3" "S4" > .. .. .. .. ..$ : NULL > .. .. .. ..@ x : num [1:20] 1 1 1 1 1 1 1 1 1 1 ... > .. .. .. ..@ factors : list() > .. ..$ Utr : num [1:4] 1260 1211 1226 1279 > .. ..$ V : num [1:20, 1:4] 1 1 1 1 1 1 1 1 1 1 ... > .. ..$ VtV : num [1:4, 1:4] 20 0 0 0 10 10 0 0 10 5 ... > .. ..$ Vtr : num [1:4] 9963 4962 4941 2505 > .. ..$ X : num [1:20, 1:4] 1 1 1 1 1 1 1 1 1 1 ... > .. .. ..- at...

Hi. To begin with, I have a freshly built RedHat Linux 8.0 box running samba 2.2.8a. The kernel version is 2.4.18-14. I downloaded and compiled samba from source. I am using LPRng-3.8.9-6 as my printing system. The attached printer is a Lexmark Z22 printer and it is attached to the parralel port. Problem: For the life of me, I can't get NT type clients, NT4, 2K and XP to print to samba.