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Hi all, The dict package provides a dictionary (hashtable) data structure much like R's built-in environment objects, but with the following differences: - The Dict class can be subclassed. - Four different hashing functions are implemented and the user can specify which to use when creating an instance. I'm sending this here as opposed to R-packages because this package will

Hi, I was wondering if anyone has played around this this package called "rdict"? It attempts to implement a hash table in R using skip lists. Just came across it while trying to look for simpler text manipulation methods: http://userprimary.net/posts/2010/05/29/rdict-skip-list-hash-table-for-R/ Cheers, Paul [[alternative HTML version deleted]]

RSQLite 0.6-7 has been uploaded to CRAN and should hit a mirror near you in the next few days. This version changes the behavior of the dbGetQuery method to make it more consistent with dbSendQuery. Specifically: 1. dbGetQuery now closes a complete result set as dbSendQuery does. 2. If there is an incomplete result set open, dbGetQuery still opens a new temporary connection, but now issues

RSQLite 0.6-7 has been uploaded to CRAN and should hit a mirror near you in the next few days. This version changes the behavior of the dbGetQuery method to make it more consistent with dbSendQuery. Specifically: 1. dbGetQuery now closes a complete result set as dbSendQuery does. 2. If there is an incomplete result set open, dbGetQuery still opens a new temporary connection, but now issues

I am running the nnet package as > neural.soft<-nnet(custcat~region+ed+marital+tenure+age+address+income,size=3,softmax=TRUE) This returns the error message : formal argument "softmax" matched by multiple actual arguments Here the dependent variable "custcat" is a factor with 4-levels. This error does not crop up for any other arguments of nnet(), including

Hi, Tried with R 2.6 and R 2.7: > gregexpr("", "abc", fixed=TRUE) *** caught segfault *** address 0x1c09000, cause 'memory not mapped' Traceback: 1: gregexpr("", "abc", fixed = TRUE) Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace

Hi, for 'affxparser' (Bioconductor), we needed a function to test if a certain package was loaded or not, but we did not want to load it if it wasn't, which is why we couldn't use require(). We came up with the following solution: isPackageLoaded <- function(package, version=NULL, ...) { s <- search(); if (is.null(version)) { s <-

Seth, I encountered problems installing RSQLite, R-2.7.0, on RHEL4 using Intel 10.1 icc, My sysadmin helped me track down the problem and kindly forwarded me the fix, which corrected the problem. What follows is from the sysadmin. Mark I looked at the error, looks like there is a bug in the source code. I've attached a new tarball, hopefully fixed. I added #include <sys/types.h>

As far as I can tell, 'isOpen' cannot return FALSE in the case when 'rw = ""'. If the connection has already been closed by 'close' or some other function, then isOpen will produce an error. The problem is that when isOpen calls 'getConnection', the connection cannot be found and 'getConnection' produces an error. The check to see if it is

Hi folks, Ubuntu 10.04 64 bit Where can I find 64 bit RSQLite? It seems not there; RSQLite: SQLite interface for R http://cran.r-project.org/web/packages/RSQLite/index.html TIA B.R. Stephen L

Should functions or the user be responsible for coercing an S4 object argument containing the proper object (and thus should below be considered a bug in the packages or not)? The example is with RSQLite but the same thing happens with RMySQL, and other DBI packages. > library("RSQLite") Loading required package: DBI > m <- dbDriver("SQLite") > con <-

RDieHarder fails its regression tests on x86_64 (aka "amd64") at CRAN (using Debian), and I see the same on Ubuntu 8.10 in 64 bit. No issues on 32bit. One odd thing is that the program behaves well if run via R --no-save < tests/RDieHarder.R but NOT when started using R --slave < tests/RDieHarder.R as R CMD check does. So I tried different things related to startup

A new version of RSQLite (0.8-4) is now available on CRAN. Highlights of this release: Version 0.8-4 - Fix a memory leak in bound parameter management and resolve a missing PROTECT bug that caused spurious crashes when performing many prepared queries. - There is now a fairly comprehensive example of using prepared queries in the man page for dbSendQuery-methods. - Upgrade to SQLite

RSQLite is an R package conforming to the R DBI interface that allows for interaction with SQLite. Version 0.9-0 highlights: * Support for SQLite BLOBs using raw vectors in R * New memory model for db connections allows for more familiar R semantics and no predefined limit to the number of connections you can have in an R session. * Upgrade to SQLite 3.6.23.1 * Removed an unnecessary

RSQLite.extfuns provides SQLite extension functions for use with RSQLite. The package is a wrapper of extension functions written by Liam Healy and made available through the SQLite website (http://www.sqlite.org/contrib). You can make the extension functions available on a per db connection basis like this: library("RSQLite.extfuns") db <- dbConnect(SQLite(), dbname =

Hello, I want to use expresso for preprocessing the hgu133a-spikein data from affycompII. But there is an error: > library(affy) > path <- "z:/Microarray/hgu133a-spikein/rawdata" > celFile <- list.celfiles(path=path,full.names=TRUE); > affyBatch <- ReadAffy(filenames=celFile[1:6]); > eset1 <-

Hello all, I consider myself pretty new to the whole OO based programming so I'm sorry if I'm doing something stupid. > xml<-read.metlin(url) Error in function (classes, fdef, mtable) : unable to find an inherited method for function "read.metlin", for signature "url" >read.metlin standardGeneric for "read.metlin" defined from package

Sorry mistake from me. This was another problem in my mind , but with RMySQL. Christian > library(RMySQL) > library(sqldf) > sqldf("Select * from mtcars") Fehler in mysqlNewConnection(drv, ...) : RS-DBI driver: (Failed to connect to database: Error: Access denied for user 'user'@'localhost' (using password: NO) ) Fehler in if (dbname ==

Hello, All! I have function which is written in C, the function uses other functions also builded bu me. Now I need to use the function to build R function. My questions are: 1. How can I include libraries (for example, iomanip, sstream, tcl.h)? 2. Should I put other function to the separate file and then include the file? Thanks All :) Olga [[alternative HTML version deleted]]

A new version of RSQLite (0.8-4) is now available on CRAN. Highlights of this release: Version 0.8-4 - Fix a memory leak in bound parameter management and resolve a missing PROTECT bug that caused spurious crashes when performing many prepared queries. - There is now a fairly comprehensive example of using prepared queries in the man page for dbSendQuery-methods. - Upgrade to SQLite