search for: userprimary

...it on CRAN or retiring it to /dev/null. The design makes it fairly easy to add additional hashing functions, although currently this must be done in C. If nothing else, this package should be useful for evaluating hashing functions (see the vignette for some examples). Source: R-2.6.x: http://userprimary.net/software/dict_0.1.0.tar.gz R-2.5.x: http://userprimary.net/software/dict_0.0.4.tar.gz Windows binary: R-2.5.x: http://userprimary.net/software/dict_0.0.4.zip + seth -- Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center http://bioconductor.org

Hi, I was wondering if anyone has played around this this package called "rdict"? It attempts to implement a hash table in R using skip lists. Just came across it while trying to look for simpler text manipulation methods: http://userprimary.net/posts/2010/05/29/rdict-skip-list-hash-table-for-R/ Cheers, Paul [[alternative HTML version deleted]]

...t now issues a warning. It is best practice to explicitly close open result sets before issuing further queries. These changes are in response to the following discussion on the r-sig-db list: https://stat.ethz.ch/pipermail/r-sig-db/2008q1/000399.html + seth -- Seth Falcon | seth at userprimary.net | blog: http://userprimary.net/user/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...t now issues a warning. It is best practice to explicitly close open result sets before issuing further queries. These changes are in response to the following discussion on the r-sig-db list: https://stat.ethz.ch/pipermail/r-sig-db/2008q1/000399.html + seth -- Seth Falcon | seth at userprimary.net | blog: http://userprimary.net/user/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...essage : formal argument "softmax" matched by multiple actual arguments Here the dependent variable "custcat" is a factor with 4-levels. This error does not crop up for any other arguments of nnet(), including entropy=TRUE, linout=TRUE and censored=TRUE This post : http://userprimary.net/posts/2010/03/16/reentrant-bugs-without-concurrency/ http://userprimary.net/posts/2010/03/16/reentrant-bugs-without-concurrency/ identifies the error message formal argument "< >" matched by multiple actual arguments as a bug arising out of the R-internals function matchArgs...

Hi, Tried with R 2.6 and R 2.7: > gregexpr("", "abc", fixed=TRUE) *** caught segfault *** address 0x1c09000, cause 'memory not mapped' Traceback: 1: gregexpr("", "abc", fixed = TRUE) Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace

Hi, for 'affxparser' (Bioconductor), we needed a function to test if a certain package was loaded or not, but we did not want to load it if it wasn't, which is why we couldn't use require(). We came up with the following solution: isPackageLoaded <- function(package, version=NULL, ...) { s <- search(); if (is.null(version)) { s <-

Seth, I encountered problems installing RSQLite, R-2.7.0, on RHEL4 using Intel 10.1 icc, My sysadmin helped me track down the problem and kindly forwarded me the fix, which corrected the problem. What follows is from the sysadmin. Mark I looked at the error, looks like there is a bug in the source code. I've attached a new tarball, hopefully fixed. I added #include <sys/types.h>

As far as I can tell, 'isOpen' cannot return FALSE in the case when 'rw = ""'. If the connection has already been closed by 'close' or some other function, then isOpen will produce an error. The problem is that when isOpen calls 'getConnection', the connection cannot be found and 'getConnection' produces an error. The check to see if it is

Hi folks, Ubuntu 10.04 64 bit Where can I find 64 bit RSQLite? It seems not there; RSQLite: SQLite interface for R http://cran.r-project.org/web/packages/RSQLite/index.html TIA B.R. Stephen L

Should functions or the user be responsible for coercing an S4 object argument containing the proper object (and thus should below be considered a bug in the packages or not)? The example is with RSQLite but the same thing happens with RMySQL, and other DBI packages. > library("RSQLite") Loading required package: DBI > m <- dbDriver("SQLite") > con <-

RDieHarder fails its regression tests on x86_64 (aka "amd64") at CRAN (using Debian), and I see the same on Ubuntu 8.10 in 64 bit. No issues on 32bit. One odd thing is that the program behaves well if run via R --no-save < tests/RDieHarder.R but NOT when started using R --slave < tests/RDieHarder.R as R CMD check does. So I tried different things related to startup

...The return value is the same as rbind'ing the results of the individual queries. This means that parameters that return no results are ignored in the result. Full NEWS items available here: http://cran.r-project.org/web/packages/RSQLite/NEWS + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...or the manager handle. This should make use of RSQLite with the multicore package easier. * RSQLite now depends on R >= 2.10.0 You can read more details about these and other changes here: http://cran.r-project.org/web/packages/RSQLite/NEWS + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...e has been modified to provide the SQLite header files in the installed include directory so that RSQLite.extfuns (and other packages wishing to provide SQLite extension functions) can use LinkingTo. The default value of loadable.extensions is now TRUE. + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

Hello, I want to use expresso for preprocessing the hgu133a-spikein data from affycompII. But there is an error: > library(affy) > path <- "z:/Microarray/hgu133a-spikein/rawdata" > celFile <- list.celfiles(path=path,full.names=TRUE); > affyBatch <- ReadAffy(filenames=celFile[1:6]); > eset1 <-

Hello all, I consider myself pretty new to the whole OO based programming so I'm sorry if I'm doing something stupid. > xml<-read.metlin(url) Error in function (classes, fdef, mtable) : unable to find an inherited method for function "read.metlin", for signature "url" >read.metlin standardGeneric for "read.metlin" defined from package

Sorry mistake from me. This was another problem in my mind , but with RMySQL. Christian > library(RMySQL) > library(sqldf) > sqldf("Select * from mtcars") Fehler in mysqlNewConnection(drv, ...) : RS-DBI driver: (Failed to connect to database: Error: Access denied for user 'user'@'localhost' (using password: NO) ) Fehler in if (dbname ==

Hello, All! I have function which is written in C, the function uses other functions also builded bu me. Now I need to use the function to build R function. My questions are: 1. How can I include libraries (for example, iomanip, sstream, tcl.h)? 2. Should I put other function to the separate file and then include the file? Thanks All :) Olga [[alternative HTML version deleted]]

...The return value is the same as rbind'ing the results of the individual queries. This means that parameters that return no results are ignored in the result. Full NEWS items available here: http://cran.r-project.org/web/packages/RSQLite/NEWS + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages