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gtrnadb
2010 Mar 12
0
How (and where) to get aligned tRNA sequences (and import/align it using R)
...this list too.
Dear list.
I wish (for my thesis work), to import tRNA data into R and have it aligned.
My questions are:
1) What resources can I use for the data.
2) What commands might help me with the import/alignment.
So far, I found two nice repositories that holds such data:
1) <http://trnadb.bioinf.uni-leipzig.de/Result>
http://trnadb.bioinf.uni-leipzig.de/Result
2) <http://gtrnadb.ucsc.edu/download.html>
http://gtrnadb.ucsc.edu/download.html
And also the readFASTA command from Biostrings, that does basic importing
of the data into R.
My problem still remains with *how to h...