search for: trio

I am involved in a study where, as in most of life, men demonstrate themselves to be recalcitrant. So while we have many probands and most of their mothers we only have about 50% of the trios being complete. I have been running tdt and trio.types. It appears as if it is ignoring the duos. Sometimes a duo can be informative. For instance Father ..missing Mother 1/2 Proband 1/1 This duo shows that for allele 2, this was clearly a case where 2 was untransmitted. Yet I do not think this...

...39 5 2007 R parejas 266 6 2007 N parejas 83 7 2005 R solitarios 53 8 2005 N solitarios 1 9 2006 R solitarios 109 10 2006 N solitarios 8 11 2007 R solitarios 85 12 2007 N solitarios 34 13 2005 R trios 29 14 2005 N trios 1 15 2006 R trios 62 16 2006 N trios 19 17 2007 R trios 48 18 2007 N trios 3 How can I do this? I saw the help of the "mosaic" command, and I found that the files are like a hig-dimensio...

Dear R mailing list, I have a dataset with genotypes from trios and I would like to infer haplotypes for each mother, father and child. The package that I could find that can do this is tdthap. But when the mother is homozygous (e.g., 2/2) the haplotype is called as not possible to infer (0); I would prefer for it to call the genotype (2). From what I und...

...id=0 smb_uid=0 smb_mid=0 smt_wct=0 smb_bcc=0 [2008/02/27 12:19:49, 5] nsswitch/winbindd_cm.c:cm_prepare_connection(346) Connected anonymously while my properly working server gives: [2008/02/27 12:31:27, 10] passdb/secrets.c:secrets_named_mutex(778) secrets_named_mutex: got mutex for TRIO [2008/02/27 12:31:27, 6] libsmb/clientgen.c:write_socket(132) write_socket(15,183) [2008/02/27 12:31:27, 6] libsmb/clientgen.c:write_socket(135) write_socket(15,183) wrote 183 [2008/02/27 12:31:27, 10] lib/util_sock.c:read_smb_length_return_keepalive(623) got smb length of 127 [2008/02/27 12:...

Good morning When I try to run an Apriori, I keep often the following message: checking subsets of size 1Error in apriori(tr, parameter = list(supp = 3e-05, conf = 0.05, minlen = 2, : internal error in trio library Other time it works fine on the same data. What can be the reason for this? -- Jolinda Bartlett Eighty20 Consulting Tel: 021 460 0440 Fax: 087 625 0649 3.1 East Wing The Palms 145 Sir Lowry Road Woodstock 7925 Cape Town South Africa [[alternative HTML version deleted]]

...ly compile R-devel tarball every few days (just to check if I can do it and check for any compile errors). As of two days ago, I am receiving the following error: ... gcc -O3 -I. -DWIN32 -D_X86_ -c xdr_mem.c -o xdr_mem.o ar crs libxdr.a xdr.o xdr_float.o xdr_stdio.o xdr_mem.o make: *** ../extra/trio: No such file or directory. Stop. make[3]: *** [rlibs] Error 1 make[2]: *** [../../bin/R.dll] Error 2 make[1]: *** [rbuild] Error 2 make[1]: Leaving directory `/home/andyj/R-devel/src/gnuwin32' make: *** [distribution] Error 2 Looking at the Makefile in R-devel/src/gnuwin32 reveals that it wa...

Full_Name: Oren Cheyette Version: 2.7.2 OS: Win XP Submission from: (NULL) (64.161.123.194) Enter the following at the R command prompt: > sprintf("A %S %S %S XYZ", 1, 1, 1); Note the erroneous capitalized %S instead of %s and the numeric inputs instead of strings. With strings there's no crash - R reports bad format specifications.

...console.o dynload.o editor.o embeddedR.o extra.o opt.o pager.o preferences.o psignal.o rhome.o rt_complete.o rui.o run.o shext.o sys-win32.o system.o dos_wglob.o dllversion.o ../main/libmain.a ../appl/libappl.a ../nmath/libnmath.a getline/gl.a ../extra/xdr/libxdr.a ../extra/intl/libintl.a ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/tre/libtre.a -fopenmp -L. -lgfortran -lquadmath -lRblas -L../../bin/x64 -lRgraphapp -lRiconv -lcomctl32 -lole32 -luuid -lwinmm -lversion -L"/x86_64-w64-mingw32.static.posix"/lib/x64 -lpcre2-8 -lz -lbz2 -llzma -L""/lib/x64 -lsicuin -lsicu...

...ashes on sprintf with bad=20 > format specification >=20 > As R's sprintf is a wrapper for the OS's sprintf, misuse does=20 > run the risk of crashing from OS, and when it does the error=20 > will come from the implementation of sprintf (which for R for=20 > Windows is the Trio library). > One could argue that the OS service should not segfault on=20 > incorrect input, but this one often does. >=20 > The place to add checks is in the R wrapper code (presumably=20 > in the C component). We do have checks there, but it is hard=20 > to imagine just what er...

...sprintf with bad >> format specification >> >> As R's sprintf is a wrapper for the OS's sprintf, misuse does >> run the risk of crashing from OS, and when it does the error >> will come from the implementation of sprintf (which for R for >> Windows is the Trio library). >> One could argue that the OS service should not segfault on >> incorrect input, but this one often does. >> >> The place to add checks is in the R wrapper code (presumably >> in the C component). We do have checks there, but it is hard >> to imagine...

...ble combinations of people, i.e. 1. I would like to write a loop - in such a way that it loops through each possible pair of cases (i.e., ab, ac, ad, etc.) and sums up their respective values on 'variable' 2. I would like to write a loop - in such a way that it loops through each possible trio of cases (i.e., abc, abd, abe, etc.) and sums up their respective values on 'variable'. 3. I would like to write a loop - in such a way that it loops through each possible quartet of cases (i.e., abcd, abce, abcf, etc.) and sums up their respective values on 'variable'. etc. The...

...<-file[,c(3,6)] # because my file Data_Input_NUM has many other columns as well, so I selecting only CIN and TRN_TYP file_new <- file_new[!duplicated(file_new),] eclat(split(file_new$TRN_TYP,file_new$CIN)) but again: Error in eclat(split(file_new$TRN_TYP, file_new$CIN)) : internal error in trio library PLEASE HELP [[alternative HTML version deleted]]

I just read ''Mocks Aren''t Stubs'' and was intrigued by the notion of ''outside-in'' TDD. As a Rails developer, I''m curious if others are employing this method when developing Rails applications using RSpec. Is it common practice (or even practical) to drive the development of a Rails app by starting with view specs, then controller specs, then

I am using dgc.genetics to perform TDT analysis on SNP data from a cohort of trios. I now have a file with about 6008 variables. The first few variables related to the pedigree data such as the pedigree ID the person ID etc. Thereafter each variable is a specific locus or marker. The variables are named by a pattern such as "Genotype.nnnnn" with nnnnn corresponding...

...embeddedR.o extra.o malloc.o opt.o pager.o preferences.o psignal.o > rhome.o rt_complete.o rui.o run.o shext.o sys-win32.o system.o dos_wglob.o > dllversion.o ../main/libmain.a ../appl/libappl.a ../nmath/libnmath.a > getline/gl.a ../extra/xdr/libxdr.a ../extra/intl/libintl.a > ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/tre/libtre.a > -fopenmp -L. -lgfortran -lquadmath -lRblas -L../../lib -lRgraphapp -lRiconv > -lcomctl32 -lversion -L"D:/R64/extsoft"/lib/x64 -lpcre -lz -lbz2 -llzma > -L"D:/home/ICU"/lib/x64 -lsicuin -lsicuuc -lsicudt -lstdc++ &...

...to an error if an impossible date is selected (like the 31 of february) can''t get a way to correct this via a validation.... in fact that make sens because in the model i have the ''dateofbirth'' object which is a date object.... so providing an impossible day-month-year trio leads to an impossible creation of the date object... anyone with a solution? thanks

I have a trio of servers that like to reboot during high disk / network IO operations. They don't appear to panic, as I have kernel.panic = 0 in sysctl.conf. The syslog just shows normal messages, like samba complaining about browse master and then just syslogd starting up. The machines seem to crash when...

...it was these: 1. scott wannberg, los angeles poet, one of my favorite performers 2. michael hart, founder of project gutenberg, icon and iconoclast 3. steve jobs, seemingly the only guy who made stuff work correctly i'm sure that for others, dennis ritchie is on their list, for his own trio: 1. c 2. k&r 3. unix godspeed to all of these people, who are "heroes" just as much as any firefighter or soldier, heroes of creativity and the imagination. and a hearty "chill out" to anyone who thinks this is "off-topic"... *** meanwhile, life goes on.....

...erver at work is down. The video memory is out. Its an old IBM PC300PL, 6892-12U, running SCO. If anyone happens to a stick of this type memory and would be willing to sell it, please let me know. Below are the requirements for the video memory: The video memory interface is controlled by an S3 TRIO 3D graphics controller. The amount of SGRAM shipped with the video subsystem is 4MB in the PC 300PL computers, and 2MB in the PC 300GL computers. The video memory module used in the PC 300PL (Types 6862 and 6892) is 2 MB 512K X32, with 100MHz SGRAM. The video memory module used in the PC 300GL (Typ...

Hello, I'm using samba as a Domain Controller, and i have the following question: It is possible to change an object's (file/dir) GROUP from Windows Explorer on a Samba server? I tried editing/changing via Security tab the unix-mapped Special Permission trio ($user, $group, Everybody) but it fails when I tried to save with the "Unable to save permission changes on <object>. Permission denied" message. I was logged in as admin user. Unix <-> NT Group mappings are OK. Everything else works fine, so I can take ownership, I can change...