Avraham Adler
2023-Nov-12 21:59 UTC
[Rd] Segmentation fault early in compilation of revision 85514
When trying to compile R on Windows 10 64-bit using LTO as I always do, I encountered a segmentation fault early in the compilation. I am uncertain as to what it means (please see below for error extract). I am using the most recent version of Rtools43 (5863) and updated its libraries prior to starting the build. My EOPTS is " -march=native -pipe -mno-rtm" and my LTO/LTO_OPT/LTO_FC/LTO_FC_OPT is "-flto=1 -fuse-linker-plugin". Any explanation or suggestions would be appreciated. Thank you, Avi ``` installing zoneinfo making console.d from console.c making dynload.d from dynload.c making embeddedR.d from embeddedR.c making preferences.d from preferences.c making psignal.d from psignal.c making rui.d from rui.c making system.d from system.c gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c console.c -o console.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c dynload.c -o dynload.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c editor.c -o editor.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c embeddedR.c -o embeddedR.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -I../library/grDevices/src -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c extra.c -o extra.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c opt.c -o opt.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c pager.c -o pager.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c preferences.c -o preferences.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c psignal.c -o psignal.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c rhome.c -o rhome.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c rt_complete.c -o rt_complete.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c rui.c -o rui.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c run.c -o run.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c sys-win32.c -o sys-win32.o gcc -I../include -I. -I../extra -DHAVE_CONFIG_H -DR_DLL_BUILD -DR_ARCH='"x64"' -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -c system.c -o system.o windres -I../include -i dllversion.rc -o dllversion.o C:\rtools43\x86_64-w64-mingw32.static.posix\bin/nm.exe: mlutils.o: no symbols C:\rtools43\x86_64-w64-mingw32.static.posix\bin/nm.exe: log1p.o: no symbols C:\rtools43\x86_64-w64-mingw32.static.posix\bin/nm.exe: printf.o: no symbols C:\rtools43\x86_64-w64-mingw32.static.posix\bin/nm.exe: osdep.o: no symbols gcc -shared -O3 -Wall -pedantic -march=native -pipe -mno-rtm -flto=1 -fuse-linker-plugin -s -mwindows -o R.dll R.def console.o dynload.o editor.o embeddedR.o extra.o opt.o pager.o preferences.o psignal.o rhome.o rt_complete.o rui.o run.o shext.o sys-win32.o system.o dos_wglob.o dllversion.o ../main/libmain.a ../appl/libappl.a ../nmath/libnmath.a getline/gl.a ../extra/xdr/libxdr.a ../extra/intl/libintl.a ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/tre/libtre.a -fopenmp -L. -lgfortran -lquadmath -lRblas -L../../bin/x64 -lRgraphapp -lRiconv -lcomctl32 -lole32 -luuid -lwinmm -lversion -L"/x86_64-w64-mingw32.static.posix"/lib/x64 -lpcre2-8 -lz -lbz2 -llzma -L""/lib/x64 -lsicuin -lsicuuc /x86_64-w64-mingw32.static.posix/lib/sicudt.a -lstdc++ rui.h:37:18: warning: type of 'RConsole' does not match original declaration [-Wlto-type-mismatch] 37 | LibExtern window RConsole; | ^ rui.c:51:9: note: type 'struct objinfo' should match type 'struct gui_obj' 51 | console RConsole = NULL; | ^ rui.c:51:9: note: 'RConsole' was previously declared here rui.c:51:9: note: code may be misoptimized unless '-fno-strict-aliasing' is used make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:81: C:\rtools43\tmp\ccKMP0O7.ltrans26.ltrans.o] Error 1 (ignore d) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:171: C:\rtools43\tmp\ccKMP0O7.ltrans56.ltrans.o] Error 1 (ignor ed) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:87: C:\rtools43\tmp\ccKMP0O7.ltrans28.ltrans.o] Error 1 (ignore d) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:96: C:\rtools43\tmp\ccKMP0O7.ltrans31.ltrans.o] Error 1 (ignore d) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:6: C:\rtools43\tmp\ccKMP0O7.ltrans1.ltrans.o] Error 1 (ignored) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:195: C:\rtools43\tmp\ccKMP0O7.ltrans64.ltrans.o] Error 1 (ignor ed) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:18: C:\rtools43\tmp\ccKMP0O7.ltrans5.ltrans.o] Error 1 (ignored ) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:117: C:\rtools43\tmp\ccKMP0O7.ltrans38.ltrans.o] Error 1 (ignor ed) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:189: C:\rtools43\tmp\ccKMP0O7.ltrans62.ltrans.o] Error 1 (ignor ed) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:69: C:\rtools43\tmp\ccKMP0O7.ltrans22.ltrans.o] Error 1 (ignore d) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:90: C:\rtools43\tmp\ccKMP0O7.ltrans29.ltrans.o] Error 1 (ignore d) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:36: C:\rtools43\tmp\ccKMP0O7.ltrans11.ltrans.o] Error 1 (ignore d) make[5]: [C:\rtools43\tmp\ccUw2zA8.mk:99: C:\rtools43\tmp\ccKMP0O7.ltrans32.ltrans.o] Error 1 (ignore d) during RTL pass: expand ../extra\trio/trio.c: In function 'TrioPower': ../extra\trio/trio.c:1261:1: internal compiler error: Segmentation fault 1261 | } | ^ libbacktrace could not find executable to open Please submit a full bug report, with preprocessed source (by using -freport-bug). See <gcc.gnu.org/bugs> for instructions. make[5]: *** [C:\rtools43\tmp\ccUw2zA8.mk:197: C:\rtools43\tmp\ccKMP0O7.ltrans65.ltrans.o] Error 1 lto-wrapper.exe: fatal error: make returned 2 exit status compilation terminated. C:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: error: lto-wrapper failed collect2.exe: error: ld returned 1 exit status make[4]: *** [Makefile:167: R.dll] Error 1 make[3]: *** [Makefile:187: ../../bin/x64/R.dll] Error 2 make[2]: *** [Makefile:115: rbuild] Error 2 make[1]: *** [Makefile:17: all] Error 2 make: *** [Makefile:392: distribution] Error 2 ``` [[alternative HTML version deleted]]
Dirk Eddelbuettel
2023-Nov-13 01:13 UTC
[Rd] Segmentation fault early in compilation of revision 85514
Avi, Might be toolchain-dependent, might be options-dependent--it built fine here. Easier for you to vary option two so maybe try that? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org