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On Fri, Jul 21, 2017 at 11:39 AM, Tom Callaway <tcallawa at redhat.com> wrote: > On 07/21/2017 11:18 AM, Larry Martell wrote: >> I am trying to install R 3.4.0 on RHEL6. If I look here is it there: >> >> http://mirror.sjc02.svwh.net/fedora-epel/6/x86_64/ >> >> I did this: >> >> sudo subscription-manager rep...

...? I don't suppose we need it, since the likelihood of someone installing R module packages but not updating R is low, but I wanted to throw it out there. Tom On Mon, May 4, 2020 at 3:31 PM I?aki Ucar <iucar at fedoraproject.org> wrote: > On Mon, 4 May 2020 at 19:15, Tom Callaway <tcallawa at redhat.com> wrote: > > > > Hi folks, > > > > As expected of a new major release of R, there is a break in > compatibility > > for R packages. From the NEWS entry for 4.0.0: > > > > Packages need to be (re-)installed under this version (4.0.0) of...

Okay, I'm convinced. https://github.com/rpm-software-management/R-rpm-macros/pull/1 Thanks, Tom On Mon, May 11, 2020 at 11:48 AM I?aki Ucar <iucar at fedoraproject.org> wrote: > On Mon, 11 May 2020 at 16:29, Tom Callaway <tcallawa at redhat.com> wrote: > > > > Hmmm. That seems like a rather heavy dependency, given that I think we've > > only been forced to do rebuilds for everything as a result of 4.0.0 and > > 3.4.0. > > That's just coincidence, because if you browse old NEWS, you ca...

On 02/03/2016 09:52 AM, Tom Callaway wrote: > Are you trying to build R and components for i686 rather than x86_64? Never mind. Your logs make it clear that you're building for x86_64. Can you share the output of: pkg-config --list-all |grep libcurl curl-config --libs rpm -V libcurl-devel libcurl I'm honestly baffled as to why the configure script is failing to find libcurl.pc on

...you spot something of concern. Hopefully I am good to go now. Thanks for the assist, Larry -----Original Message----- From: R-SIG-Fedora [mailto:r-sig-fedora-bounces at r-project.org] On Behalf Of Patrick, Larry B [CSSM] Sent: Wednesday, February 03, 2016 9:06 AM To: 'Tom Callaway' <tcallawa at redhat.com>; 'r-sig-fedora at r-project.org' <r-sig-fedora at r-project.org> Subject: Re: [R-sig-Fedora] rstan warning messages I used epel to install again. I removed the original installation that seemed from epel also. [root at ping /]# pkg-config --list-all |grep libc...

...and 3.4.0. Does anyone know if upstream has any sort of commitment to ABI here that we could depend on (e.g. only breaking on major versions, never minor) ? Tom On Sat, May 9, 2020 at 5:32 AM I?aki Ucar <iucar at fedoraproject.org> wrote: > On Sat, 9 May 2020 at 05:46, Tom Callaway <tcallawa at redhat.com> wrote: > > > > Thinking out loud here... do we want to have some macro magic to embed a > > dependency on an R(ABI) provides? Where R 4.0.0 would provide R(ABI) = 4 > > and all R packages built against it would pick up Requires: R(ABI) = 4 ? > > Note...

...l your help. I guess I'll file a bug in the CentOS Bug Tracker so that the nouveau driver might get fixed. I'll also post to R-help so someone with the same problem who only searches R-help and not this SIG will see the solution. -Ben -----Original Message----- From: Tom Callaway [mailto:tcallawa at redhat.com] Sent: Monday, January 11, 2016 4:10 PM To: Wittner, Ben, Ph.D.; r-sig-fedora at r-project.org Cc: Duncan Murdoch Subject: Re: [R-sig-Fedora] rgl.snapshot only captures a small portion what's visible in the RGL device window on CentOS 7 I have not tried it personally, but these...

My CMD check server started failing after upgrading to Fedora 21: LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: File `upquote.sty' not found. The problem was easily resolved by installing texlive-upquote. Perhaps this package should be included as a dependency to the R-devel package?

On Mon, Dec 15, 2014 at 6:55 AM, Tom Callaway <tcallawa at redhat.com> wrote: > As pointed out, this is no longer an issue in R 3.1.2, which is in all > Fedora branches (except 21, where it is landing later today, hopefully). Thank you. Another missing dependency pops up when running CMD check: * checking compiled code ... OK WARNING ?...

On Tue, Sep 8, 2015 at 7:58 PM, Tom Callaway <tcallawa at redhat.com> wrote: > On 09/08/2015 01:51 PM, arnaud gaboury wrote: >> So no idea why, at this part of the process, icc is not found. Weird, >> as building manually from source (no rpmbuild) is OK. > > Hm. Is icc in a normal place that is in a standard PATH (e.g. /usr/bin...

On Wed, Sep 21, 2016 at 7:39 PM, Tom Callaway <tcallawa at redhat.com> wrote: > > On 09/16/2016 10:28 AM, Jeroen Ooms wrote: > > Where are the R docs located on EL6? It seems neither R.home("doc") > > nor Sys.getenv("R_DOC_DIR") exists? > > /usr/share/doc/R-3.3.1 > Can we set this in R_DOC_DIR according...

-----Original Message----- From: Tom Callaway [mailto:tcallawa at redhat.com] Sent: Thursday, January 12, 2017 8:25 AM To: Weiner, Michael <weinerm at ccf.org>; r-sig-fedora at r-project.org Subject: Re: [R-sig-Fedora] rgl On 01/12/2017 08:01 AM, Weiner, Michael wrote: > I resolved this by reinstalling mesa-libGL (dnf reinstall libGL) seems /lib64/...

Hi folks, As expected of a new major release of R, there is a break in compatibility for R packages. From the NEWS entry for 4.0.0: Packages need to be (re-)installed under this version (4.0.0) of R. This has two impacts on Fedora/EPEL. 1. Users who update to 4.0.0 will need to rebuild any/all packages installed from CRAN. 2. Fedora/EPEL R packages will need to be rebuilt for 4.0.0. For

On Mon, Oct 9, 2017 at 4:42 PM, Tom Callaway <tcallawa at redhat.com> wrote: > > On 10/09/2017 11:16 AM, Paul Smith wrote: >> >> I am trying to install >> >> igraph package >> >> but getting the following error: >> >> ------------------ >> make: *** [/usr/lib64/R/etc/Makeconf:159: foreign-g...

On Tue, Sep 8, 2015 at 7:36 PM, Tom Callaway <tcallawa at redhat.com> wrote: > On 09/07/2015 06:16 AM, arnaud gaboury wrote: >> I want to create a clean .rpm package for R built with MKL and ICC. I >> follow Fedora instrcutions[0] to create the package. As a base, I use >> the R-3.2.2.src.rpm. >> >> I am left with th...

Got past my libgfortran issue ln -s /usr/lib64/libgfortran.so.3 /usr/lib/libgfortran.so Now if I could get RCurl and rstan installed. Thanks, Larry -----Original Message----- From: Tom Callaway [mailto:tcallawa at redhat.com] Sent: Friday, January 29, 2016 2:46 PM To: Patrick, Larry B [CSSM] <longplay at iastate.edu>; 'r-sig-fedora at r-project.org' <r-sig-fedora at r-project.org> Subject: Re: [R-sig-Fedora] rstan warning messages On 01/28/2016 09:07 AM, Patrick, Larry B [CSSM] wrote...

Full_Name: Tom Callaway Version: 2.7.2 OS: Fedora 10 (Linux/x86_64) Submission from: (NULL) (96.233.67.230) Recently, Debian identified a security issue with the javareconf script in R. I confirmed that this is still unfixed in R 2.7.2. The following patch resolves the issue: diff -up R-2.7.2/src/scripts/javareconf.BAD R-2.7.1/src/scripts/javareconf --- R-2.7.2/src/scripts/javareconf.BAD

On Tue, Jun 7, 2016 at 11:46 AM, Tom Callaway <tcallawa at redhat.com> wrote: > On 06/06/2016 05:04 PM, Brian Fallik wrote: > > Apologies if this email is a top post. I'm not sure how to reply to a > > thread if I'm not subscribed. > > > > We recently encountered the same issue that Evan reported on 6/4 and I >...

...4 already installed and latest version<br />Nothing to do<br />:~> <br /><br /><br /></div><div><br /><div class="elided-text">On Tue, Apr 14, 2015 at 8:39 AM, Tom Callaway <span dir="ltr"><<a href="mailto:tcallawa@redhat.com">tcallawa@redhat.com</a>></span> wrote:<br /><blockquote style="margin:0 0 0 0.8ex;border-left:1px #ccc solid;padding-left:1ex">No, that's not it. The error is that you don't have the g++ binary installed. Undo that change and yum inst...

...iling Recommended packages: yes I haven't seen the JIT message but will give a try at the glibc-devel: Here is the whole log from the configure command https://www.dropbox.com/s/m4g2w1hrr2uqldr/configure%20result%20R.txt?dl=0 -----Original Message----- From: Tom Callaway [mailto:tcallawa at redhat.com] Sent: mi?rcoles, 23 de agosto de 2017 21:48 To: Jaime Alvarez Benayas <jalvarezbenayas1 at sheffield.ac.uk>; r-sig-fedora at r-project.org Subject: Re: [R-sig-Fedora] No rule to make target all.R, needed by compiler.rdb building R 3.4.1 from source, Scientific Linux release 6....