Displaying 4 results from an estimated 4 matches for "summarizedexperiment".
2018 Sep 18
2
Suggested Patch: Adding commas to list of packages after R CMD check
...tension type ... Package
* this is package 'glmSparseNet' version '0.99.13'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available:
'MultiAssayExperiment' 'glmnet' 'SummarizedExperiment' 'STRINGdb'
'biomaRt' 'futile.logger' 'sparsebn' 'sparsebnUtils' 'forcats'
'dplyr' 'readr' 'ggplot2' 'ggfortify' 'reshape2' 'rlang' 'loose.rock'
Packages suggested but not available:
&...
2018 Sep 18
0
Suggested Patch: Adding commas to list of packages after R CMD check
...this is package 'glmSparseNet' version '0.99.13'
> * package encoding: UTF-8
> * checking package namespace information ... OK
> * checking package dependencies ... ERROR
> Packages required but not available:
> 'MultiAssayExperiment' 'glmnet' 'SummarizedExperiment' 'STRINGdb'
> 'biomaRt' 'futile.logger' 'sparsebn' 'sparsebnUtils' 'forcats'
> 'dplyr' 'readr' 'ggplot2' 'ggfortify' 'reshape2' 'rlang' 'loose.rock'
>
> Packages suggested...
2018 Mar 21
0
Error in GDCprepare step of TCGAbiolinks
...workflow.type = "HTSeq - Counts",
experimental.strategy = "RNA-Seq")
query_load <- GDCdownload(query.exp)
luad.exp <- GDCprepare(query = query.exp, save = TRUE, save.filename =
"TCGA_LUAD_Exp.rda",
summarizedExperiment = TRUE)
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100% 1 MB
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2019 Jul 04
2
Fwd: Fedora 31 System-Wide change proposal: Automatic R runtime dependencies
...t
* R-S4Vectors
* R-sandwich
* R-scales
* R-scatterplot3d
* R-sciplot
* R-selectr
* R-sessioninfo
* R-sfsmisc
* R-shiny
* R-showtext
* R-showtextdb
* R-simmer
* R-snow
* R-sodium
* R-sourcetools
* R-sp
* R-spelling
* R-statmod
* R-statnet.common
* R-stringdist
* R-stringi
* R-stringr
* R-styler
* R-SummarizedExperiment
* R-svglite
* R-sys
* R-sysfonts
* R-systemfit
* R-testit
* R-testthat
* R-tibble
* R-tidyr
* R-tidyselect
* R-tikzDevice
* R-timeDate
* R-timeSeries
* R-tinytest
* R-tinytex
* R-tkrplot
* R-tkWidgets
* R-tufte
* R-tweenr
* R-udunits2
* R-unitizer
* R-units
* R-unix
* R-usethis
* R-utf8
* R-uuid
*...