search for: stvjc

this is from a fresh svn checkout: [stvjc at stvjc1 R-devel]$ ls -tl Makefile -rw-rw-r-- 1 stvjc stvjc 12833 Jun 26 07:24 Makefile [stvjc at stvjc1 R-devel]$ svn up At revision 45988. [stvjc at stvjc1 R-devel]$ bin/R R version 2.8.0 Under development (unstable) (--) Copyright (C) The R Foundation for Statistical Computing ISBN 3-900051-...

subsequent to a fresh svn checkout, configure, make: make[5]: Leaving directory `/udd/stvjc/JEDI/R200/src/library/tools/src' make[4]: Leaving directory `/udd/stvjc/JEDI/R200/src/library/tools/src' Error in loadNamespace(package, lib.loc, keep.source, TRUE, TRUE) : 'tools' is not a valid package -- installed < 2.0.0? Execution halted make[3]: *** [all] Error 1 ma...

...builds/tests on. I did try bash-3.2$ clang++ -v clang version 3.2 (tags/RELEASE_32/final) Target: x86_64-apple-darwin10.8.0 Thread model: posix bash-3.2$ clang++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Users/stvjc/ExternalSoft/READLINE-62-DIST/lib -lreadline -L//Users/stvjc/ExternalSoft/LIBICONV-64/lib -liconv -L/Users/stvjc/ExternalSoft/jpeg-6b -ljpeg -o cliques.so cliques.o -F/Users/stvjc/ExternalSoft/R-devel-dist/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation and this aping of the R CMD SH...

...builds/tests on. I did try bash-3.2$ clang++ -v clang version 3.2 (tags/RELEASE_32/final) Target: x86_64-apple-darwin10.8.0 Thread model: posix bash-3.2$ clang++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Users/stvjc/ExternalSoft/READLINE-62-DIST/lib -lreadline -L//Users/stvjc/ExternalSoft/LIBICONV-64/lib -liconv -L/Users/stvjc/ExternalSoft/jpeg-6b -ljpeg -o cliques.so cliques.o -F/Users/stvjc/ExternalSoft/R-devel-dist/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation and this aping of the R CMD SH...

...e. John -- John M. Chambers jmc@bell-labs.com Bell Labs, Lucent Technologies office: (908)582-2681 700 Mountain Avenue, Room 2C-282 fax: (908)582-3340 Murray Hill, NJ 07974 web: http://www.cs.bell-labs.com/~jmc > From: "Vincent J. Carey, Jr." <stvjc@channing.harvard.edu> > Sender: omega-bugs-admin@omegahat.org > Errors-To: omega-bugs-admin@omegahat.org > Precedence: bulk > List-Help: <mailto:omega-bugs-request@omegahat.org?subject=help> > List-Post: <mailto:omega-bugs@omegahat.org> > List-Subscribe: <http://...

...Biobase_1.13.19 [13] limma_2.9.5 loaded via a namespace (and not attached): [1] KernSmooth_2.22-20 RColorBrewer_0.2-3 rcompgen_0.1-13 --- Vince Carey, PhD Assoc. Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 181 Longwood Ave Boston MA 02115 USA stvjc at channing.harvard.edu

Did not seem to reach Saikat DebRoy, this might be the forum. Bendix -----Original Message----- From: BXC (Bendix Carstensen) Sent: 24. november 2008 15:00 To: 'saikat at stat.wisc.edu'; 'stvjc at channing.harvard.edu' Subject: read.ssd It's always annoyed me that that read.ssd crashed on datasets with long variable names, but the other day a collegue of mine pointed out to me the SAS-option validvarname=V6, which takes care of the problem by truncating names. So here is a firs...

...her graphical formats and languages not mentioned here may be relevant and comments to this effect are welcome. -- --- Vince Carey, PhD Ass't Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 cell 8572126768 181 Longwood Ave Boston MA 02115 USA stvjc@channing.harvard.edu -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r...

Full_Name: Markus Jantti Version: 1.5.1 OS: GNU/Linux Unstable (Sid) Submission from: (NULL) (193.166.59.44) I was trying to get the package yags 3.20 by Vince Carey <stvjc@channing.harvard.edu> to run, but - after successfull installation -- loading the library failed with the message > library(yags) Error in stop(paste("Duplicated slot names: ", paste(slots[duplicated(slo : unused argument(s) (sep ...) Error in eval(expr, envir, enclos) :...

...uot;, i); } exit (ferror (f) || fclose (f) != 0); ; return 0; } configure:12951: error: cannot compute sizeof (int), 77 --- Vince Carey, PhD Ass't Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 181 Longwood Ave Boston MA 02115 USA stvjc at channing.harvard.edu

...in cremo is extremely primitive and some more sensible approaches are sketched on the cremo.html page. Distributed under GPL2. -- --- Vince Carey, PhD Ass't Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 181 Longwood Ave Boston MA 02115 USA stvjc@channing.harvard.edu -----BEGIN PGP PUBLIC KEY BLOCK----- Version: PGP 6.5.8 mQCNAzqIeGUAAAEEAMJXU941vIornTS52rl6z7eo+A7wwB0km/idLnkxzIhc1uLi Qtn19OyOfG6IDSucLrtmpvwagemAnQ9jL6TVDrmlrKnqsh+FFtvUuZ37eV85L70E BsS8RZCmMYHJKfrpCwegbTVZrEkd1ByquLIN/yUwxU4IcVuHxbNQk69riQ8tAAUR tBVWaW5jZW50IEouIENhcmV5L...

<<insert bug report here>> in src/library/Recommended, make yields make: *** No rule to make target `survival.ts', needed by `all'. Stop. this kills the build. but "make check" succeeds --please do not edit the information below-- Version: platform = i686-pc-linux-gnu arch = i686 os = linux-gnu system = i686, linux-gnu status = Under development

The name conflicts in Epi and ROC packages (2 'ROC' functions are the problem) cause the following code to work once, but not twice: library(MASS); data(cats); x = cats[,2] y = ifelse(cats[,1]=='F',0,1) library(Epi); ROC(x,y,grid=0)$AUC library(ROC); AUC(rocdemo.sca(y, x, dxrule.sca)) What is the standard way of resolving name conflicts? Ask maintainers to resolve

luke's demonstration of external references, at www.stat.umn.edu/~luke/file_0.0-0.tar.gz (accessible through the developer page) causes a segfault on solaris 2.8 as soon as library(file) is attempted. it runs fine on RH 7.2. the segfault on solaris occured for R 1.5.1 and 1.6 (8-25 image) a quick poke at gdb (which i can only get running for R 1.6, though this bug report is for 1.5.1)

can list names attributes be preserved through S4 class containment? seems to be so but only if the containment relationship is direct ... see below. > setClass("c1", contains="list") [1] "c1" > l1 = list(a=1, b=2) > o1 = new("c1", l1) > names(o1) # pleasant surprise [1] "a" "b" > setClass("c2",

...3 -1.837721 0.048131236 -0.5398992 ? PSI 0.007095163 0.001035622 6.851114 0.003543198 2.0024740 ? Working correlation model: exchangeable alpha est: 0.7344 NULL Pan QIC(R): 7534.732 QLS: 56989.3 Rotnitzky-Jewell: 9.477, 143.987 yags/R: $Id: yags.R,v 1.5 2004/10/22 18:49:23 stvjc Exp $ > beta1=coef(wee) > beta1 NULL > summary(wee) Length Class Mode 1 yagsResult S4 > summary(wee) FYI, in the following geeglm analysis, I have gotten beta=coef(wgee) as a row vector(highlighted): mf=formula(Ddimer~newrace+steroid+treatment+SOF...

markus.jantti@iki.fi wrote: > > Full_Name: Markus Jantti > Version: 1.5.1 > OS: GNU/Linux Unstable (Sid) > Submission from: (NULL) (193.166.59.44) > > I was trying to get the package yags 3.20 by Vince Carey > <stvjc@channing.harvard.edu> > to run, but - after successfull installation -- loading the library failed with > the > message > > > library(yags) > Error in stop(paste("Duplicated slot names: ", paste(slots[duplicated(slo > : > unused argument(s) (sep ...)...

...thur\\SAS_Application\\SAS_Data_Sets","use") instead, hth, Merry Christmas, Bernhard -----Original Message----- From: Stephen Arthur [mailto:sarthur67 at yahoo.com] Sent: 20 December 2002 16:55 To: ripley at stats.ox.ac.uk; rossini at blindglobe.net Cc: r-help at stat.math.ethz.ch; stvjc at channing.harvard.edu Subject: Part II Re: [R] read.ssd {foreign} (Reading a permanent SAS dataset into an R data frame) Hello, I adopted the suggestion to use the R command > foreign before the > read.ssd("J:\\QM\\Reports\\Sarthur\\SAS_Application\\SAS_Data_Sets","use...

On Thu, 19 Sep 2002 10:43:01 -0400 (EDT), you wrote in message <200209191443.KAA17404@falmouth.bwh.harvard.edu>: >Hi Duncan -- I am curious as to whether you are building/distributing >R 1.6.0 for windows? There's nothing urgent about it, I have one. >The question is how to identify a distribution URL if one exists. I will be building and distributing the final release.

If I run an analysis which generates statistical tests on many SNPs I would naturally want to get more details on the most significant SNPs. Directly from within R one can get the information by loading RSNPer (from Bioconductor) and simply issuing a command SNPinfo(2073285). Unfortunately, the command cannot handle a vector and therefore only wants to do one at a time. I tried the lapply and