search for: staine

Hello all, I have not been able to find an answer to this problem. I feel like it might be so simple though that it might not get a response. Suppose I have a dataframe like the one I have copied below (minus the 'calib' column). I wish to create a column like calib where I am subtracting the 'Count' when 'stain' is 'none' from all other 'Count' data for

Hi, I was wondering if I might be able to ask some advice about doing residual plots for the lmer function in the lme4 package. Our group's aim is to find if the expression staining of a particular gene in a sample (or "core") is related to the pathology of the core. To do this, we used the lmer function to perform a logistic mixed model below. I apologise in advance

Hello, i've ubuntu 8.04 (32bit) with wine 1.0-rc5. I've installed without problem vampire: bloodlines and it works fine in the menu, but when the game starts the audio works well but the video is all "orange". As graphic card i've a ati moblitiy x1600 with official driver (installed using envyNG) and before start the game i've used compiz-switch to disable compiz. the

I've experienced some troubles using scp with remote files with spaces, amphersands or parantheses in their filenames on Linux hosts. This happens: stain at false:~$ scp "bender.linpro.no:blapp blapp" . scp: blapp: No such file or directory scp: blapp: No such file or directory stain at false:~$ scp "bender.linpro.no:blapp&blapp" . bash: blapp: command

...ver the last few years, but I can't help feeling that I'm missing something obvious, which I've been too dim to spot. Please note the answer to my requirements is *not* a clever use of lattice. This question goes beyond graphs. All suggestions gratefully received! Best wishes, Anthony Staines -- Anthony Staines,? Professor of Health Systems Research, School? of Nursing, Dublin City University, Dublin 9, Ireland. Tel:- +353 1 7007807. Mobile:- +353 86 606 9713

...except - Error: attempt to select more than one element I've read the manuals, and selections of the reference manual without achieving wisdom. I'm fairly sure that this is a very easy question, but I can't work it out by myself - and my head now hurts. Any suggestions? -- Anthony Staines Please reply to my work e-mail address anthony.staines at ucd.ie _________________________________________________________________ Join the world’s largest e-mail service with MSN Hotmail. http://www.hotmail.com -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-h...

...#39;rel error' are something to do with error but what? 'Root node error ' seems to be some sort of deviance, and I have no idea what 'rel error' is. the tree library does produce a simple estimate of misclassification, but rpart doesn't seem to. Any ideas? Thanks, Anthony Staines -- Dr. Anthony Staines, Senior Lecturer in Epidemiology. School of Public Health and Population Sciences, UCD, Earlsfort Terrace, Dublin 2, Ireland. Tel:- +353 1 716 7345. Fax:- +353 1 716 7407 Mobile:- +353 86 606 9713 Web:- http://phm.ucd.ie

...nual for the lattice commands, and the nlme command, and indeed for the plain plot command, but failed to get any ideas. Roughly, I need to tell lattice to use the full vertical extent of the display device. If it helps, I can e-mail the offending images to you individually on request. Anthony Staines, Public Health, UCD

Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an automatic way. I had a look on biops and EBImage (Bioconductor) but they are not automatic... Did you already use/know a such package ? Thanks, - Martial _________________________________________________________________ Tchattez en direct en en vidéo avec vos amis ! [[...

...les equally well (or equally poorly), but has an overall error rate (just over 30%) higher than either of the rpart models (about 25%). My instinct is to go for the bagging results, as they seem more reasonable, but my colleagues really like the lower overall error rate. Any thoughts? Ta, Anthony Staines -- Dr. Anthony Staines, Senior Lecturer in Epidemiology. School of Public Health and Population Sciences, UCD, Earlsfort Terrace, Dublin 2, Ireland. Tel:- +353 1 716 7345. Fax:- +353 1 716 7407 Mobile:- +353 86 606 9713 Web:- http://phm.ucd.ie [[alternative HTML version deleted]]

...39;. Any ideas - are there multiple versions of the SPSS format, are there OS issues? I can't find anything helpful about the format either on the SPSS site, or on the PSPP site. We have earlier versions of SPSS around, so we re-install one and we could re-write it if that would help. Anthony Staines -- -- Dr. Anthony Staines, Senior Lecturer in Epidemiology. ***Note New Address *** Note New Address **** School of Public Health and Population Sciences, Woodview House, UCD, Belfield, Dublin 4, Ireland. Tel:- +353 1 716 7345. Fax:- +353 1 716 7407 Mobile:- +353 86 606 9713 Web:- http://phm.uc...

...this seems to work on the whole vector of IDs, producing, in my case, a vector with 60,000 identical entries. H.Out$P_ID = digest(H.In$MRNr,serialize=FALSE, algo='md5') I could do this in Perl, but I'd have to do quite a bit of work to get it installed. Any quick suggestions? Anthony Staines -- Anthony Staines, Professor of Health Systems Research, School of Nursing, Dublin City University, Dublin 9,Ireland. Tel:- +353 1 700 7807. Mobile:- +353 86 606 9713

...number of variables which were imported. Here it is 82. Now I only want to know the names of the imported variables to modify my program. Can anyone help me? My knowledge which I tested yet to archive the goal: 1. I know that I can extract the information of a variable with the command "data$staine" for example. Here I need to know the variable name "staine" coming from Matlab. But what if I do not know it? 2. The command "data[10]" just gives me back the information stored in the variable no. 10 but I do not know the name. 3. I am not allowed to make changes in th...

...o guess - sum S2:S40 This type of thing is a common problem in my little world. Is there a better/less klutzy/smarter way of solving it than creating a new variable each time? Please bear in mind that it is critical, for later analysis, to keep the missing values in SCQ1. Best wishes, Anthony Staines -- Anthony Staines, Professor of Health Systems, School of Nursing and Human Sciences, DCU, Dublin 9,Ireland. Tel:- +353 1 700 7807. Mobile:- +353 86 606 9713 http://astaines.eu/

...male",names(data))] for (i in seq(1,length(Diseases))) { jpeg(paste(Diseases[i],".jpg")) plot(data[Male][[1]]~data$Age,type='b') lines(data[Female][[i]]~data$Age,type='b') dev.off() } -- Is this the R way to do it, or am I missing something more basic? Anthony Staines P.S. Using R 2.4.1 on Linux -- Dr. Anthony Staines, Senior Lecturer in Epidemiology. ***Note New Address *** Note New Address **** School of Public Health and Population Sciences, Woodview House, UCD, Belfield, Dublin 4, Ireland. Tel:- +353 1 716 7345. Fax:- +353 1 716 7407 Mobile:- +353 86 606...

Hello R-help. I am trying to make a stacked barplot where the color of the sections of each bar depend on another variable. > myData[1:11,] score percent marker cellType Malignant 1 0 100.00000 ESR1 (ER) Bladder.M(5) TRUE 2 0 80.00000 PAX8 Bladder.M(5) TRUE 3 1 20.00000 PAX8 Bladder.M(5) TRUE 4 0 100.00000 ESR1 (ER) Brain.N(3) FALSE 5 0

Hi, I've a question about the qplot. I use facets=Antibiotics~Gram.Stainng to draw 6 plots in a panel. Now the problem is within each 'Gram.Staining' categorical level there are some antibiotics does not have value (in my case is log(MIU)). Because some antibiotics are positive gram staining and some are negative. So my question is how to remove these missing value rows in the

I apologize overturned the sentence, rewrite it properly! I explain better: I have another linux machine added to the domain but from the same windows stain to which I log in with a domain admins account, if I connect to this other machine I see the tab security but if I connect to this machine I do not see the tab security Inviato da Posta per Windows 10 Da: Rowland Penny via samba Inviato:

...se.fit=TRUE. This does not seem to produce CI's for the non-smoothed parameters, which is what I need to calculate. CIs for the smooth, which are the focus of interest in many other cases are not of interest to me. Any suggestions? Am I missing something very obvious? Best wishes, Anthony Staines -- Anthony Staines, Professor of Health Systems, School of Nursing and Human Sciences, DCU, Dublin 9,Ireland. Tel:- +353 1 700 7807. Mobile:- +353 86 606 9713 http://astaines.eu/

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