search for: species4

Displaying 4 results from an estimated 4 matches for "species4".

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2010 Nov 05
3
table with values as dots in increasing sizes
I was just thinking of a way to present data and if it is possible in R. I have a data frame that looks as follows (this is just mockup data). df location,"species1","species2","species3","species4","species5" "loc1",0.44,0.28,0.37,-0.24,0.41 "loc2",0.54,0.62,0.34,0.52,0.71 "loc3",-0.33,0.75,-0.34,0.48,0.61 location is a factor while all the species are numerical vectors. I would like to present this as a table (or something that looks like a tab...
2011 Jul 29
1
Using perm.t.test() upon Matrix/Dataframe columns parted by factor instead of t.test()
...h perm.t.test() from deducer. Have fun with this trivial undergraduate problem. Code: c(rep("A", 5), rep("B", 5))->Faktor matrix(rnorm(100, mean=20, sd=4), nrow=10, ncol=10)->M colnames(M) <- c("species1","species2", "species3","species4","species5","species6","species7","species8","species9", "species10") ###Conventional T-Test to test for differences of each species per factor lapply( M, function(x) t.test(x~ Faktor) ) ###Trying it for perm.t.test witho...
2011 Nov 24
4
I cannot get species scores to plot with site scores in MDS when I use a distance matrix as input. Problems with NA's?
...here correspond to ?species? in such analyses. My data looks like this: Trait1 Trait2 Trait3 Trait4 Trait5 Trait? Species1 228.44 16.56 1.66 13.22 1 short Species2 150.55 28.07 0.41 0.60 1 mid Species3 NA 25.89 NA 0.55 0 large Species4 147.70 17.65 0.42 1.12 NA large Species? 132.68 NA 1.28 2.75 0 short Because the traits have different variable types, different measurement scales, and also missing values for some species, I have calculated the matrix of species distances using the Gower coeffic...
2005 Nov 03
4
merging dataframes
Dear List, I often have to merge two or more data frames containing unique row names but with some columns (names) common to the two data frames and some columns not common. This toy example will explain the kind of setup I am talking about: mat1 <- as.data.frame(matrix(rnorm(20), nrow = 5)) mat2 <- as.data.frame(matrix(rnorm(20), nrow = 4)) rownames(mat1) <- paste("site",