search for: spannel

I am having trouble installing cluster from R-1.5.0-recommended : R CMD INSTALL *.tar.gz ... g77 -fPIC -g -O2 -c pam.f -o pam.o g77 -fPIC -g -O2 -c spannel.f -o spannel.o g77 -fPIC -g -O2 -c twins.f -o twins.o cp: cannot access *.so ERROR: compilation failed for package 'cluster' [34] /home/com1/gilp/Rlibs/R-1.5.0-recommended : This is with R-1.5.0 on Solaris 5.8 using gcc 2.95.2. I have been messing around with gcc (trying to install a ne...

...radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c pam.c -o pam.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c sildist.c -o sildist.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c spannel.c -o spannel.o g77 -fpic -g -O2 -c twins.f -o twins.o gcc -std=gnu99 -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o meet.o mona.o pam.o sildist.o spannel.o twins.o -L/usr/lib/gcc/i486-linux-gnu/3.4.6 -lg2c -lm make[3]: Leaving directory `/tmp/RtmpWX7ecF/R.INSTALL2a...

...goes smoothly (congratulations for the configure and make files, this is very nice)... until the pacakge 'cluster' (see dump below).... Any hint ? Laurent 1501-510 Compilation successful for file pam.f. cc -I/data1/laurent/R-1.6.1/include -I/usr/local/include -g -O2 -c spannel.c -o spannel.o f77 -O2 -c twins.f -o twins.o ** twins === End of Compilation 1 === ** averl === End of Compilation 2 === ** banag === End of Compilation 3 === ** splyt === End of Compilation 4 === ** supcl === End of Compilation 5 === ** bandy === End of Compilation 6 === 15...

...common -g -O2 -c mona.f -o mona.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -fno-common -g -O2 -c pam.c -o pam.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -fno-common -g -O2 -c spannel.c -o spannel.o g77 -fno-common -g -O2 -c twins.f -o twins.o The downloaded packages are in /private/tmp/RtmpPddsAE/downloaded_packages gcc-3.3 -bundle -flat_namespace -undefined suppress -L/usr/local/lib - o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o spannel.o twin...

...-g -O2 -c pam.c -o pam.o gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include -I/usr/local/include -fpic -g -O2 -c sildist.c -o sildist.o gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include -I/usr/local/include -fpic -g -O2 -c spannel.c -o spannel.o gfortran -fpic -g -O -c twins.f -o twins.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o meet.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm make[3]: Leaving directory `/tmp/Rtmpgxd64f/R.INSTALL33128ce7/cluster/src'...

...R worked fine, until I trued to update.packages(). Even then, many packages updated just fine, but two of them, cluster and mgcv, failed with the following error message (using cluster as an example): gcc -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o spannel.o twins.o -lg2c -lm -lgcc_s /usr/bin/ld: cannot find -lg2c collect2: ld returned 1 exit status make: *** [cluster.so] Error 1 I tracked this down as far as I could and got to this page: http://gcc.gnu.org/fortran/usage.html in the section about "Compatability with g77." The problem see...

.../usr/bin/ld: can't locate file for: -lf77blas make: *** [KernSmooth.so] Error 1 ERROR: compilation failed for package `KernSmooth' Installing *source* package `cluster' ... [snip] cc -bundle -bundle_loader /sw/lib/R/bin/R.bin -o cluster.so clara.o daisy.o fanny.o meet.o mona.o pam.o spannel.o twins.o -L/usr/local/lib -lf2c -lm /usr/bin/ld: can't locate file for: -lf2c make: *** [cluster.so] Error 1 ERROR: compilation failed for package `cluster' --------------------------------------- So, in the first case, library f77blas was not found. I do have /sw/lib/libf77blas.a, thoug...

...n question is cluster 1.9.6 which should be 2.0.0-ready. The (partial) log follows: ----------------------------------------------------------------------------- [...] g77 -mieee-fp -fPIC -g -O2 -c twins.f -o twins.o gcc -shared -o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o spannel.o twins.o -L/usr/lib/gcc-lib/i486-linux/3.3.4 -L/usr/lib/gcc-lib/i486-linux/3.3.4/../../.. -lfrtbegin -lg2c -lm -lgcc_s -L/usr/lib/R/lib -lR make[1]: Leaving directory `/tmp/buildd/cluster-1.9.6/src' ** R ** data ** moving datasets to lazyload DB ** preparing package for lazy loading ** help...

...' ... ** R ** data Perl 5.005 required--this is only version 5.00405, stopped at /usr/local/lib/R/share/perl/maketitle.pl line 4. ** help [...] * DONE (boot) * Installing *source* package 'cluster' ... ** libs [...] gcc -shared -o cluster.so clara.o daisy.o fanny.o meet.o mona.o pam.o spannel.o twins.o -L/usr/local/lib -L/usr/local/share/icon.9.3.1/ilib -L/usr/local/lib/gcc-lib/i686-pc-linux-gnu/2.95.2 -L/usr/local/i686-pc-linux-gnu/lib -lreadline -ldl -lncurses -lg2c -lm ** R ** data Perl 5.005 required--this is only version 5.00405, stopped at /usr/local/lib/R/share/perl/maketitle....