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Dears Sirs During my computational work I encountered unexpected behavior when calling "ar" function, namely # time series x<-ts(c(-0.2052083,-0.3764986,-0.3762448,0.3740089,0.2737568,2.8235722,- 1.7783313,0.2728676,-0.3273164),start=c(1978,3),frequency=4,end=c(1980,3)) # ar function res.ar<-ar(x,aic=TRUE,demean=F) # call "ar" again and ............

...Sent: Tuesday, August 04, 2009 8:03 AM >> To: Steven McKinney >> Cc: r-devel at stat.math.ethz.ch; R-bugs at r-project.org >> Subject: Re: [Rd] Wishlist: Navigate to "Index" page of help when no >> topic specified (PR#13860) >> >> On 7/28/2009 6:30 PM, smckinney at bccrc.ca wrote: >>> Hi all, >>> >>> When I install a new package, and don't yet know any function names, >>> I have to play the "poor man's game" to get to the standard >>> help system "Index" page for the package: >>...

...on? Are there other ways? I've searched webpages, R news, help files and have been unable to find out how to get this process fully completed. Any guidance appreciated. Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney at bccrc.ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada

...on? Are there other ways? I've searched webpages, R news, help files and have been unable to find out how to get this process fully completed. Any guidance appreciated. Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney at bccrc.ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada

...cdf.envir <- getCdfInfo(object) return(ls(env = cdf.envir)) } Signatures: object target "AffyBatch" defined "AffyBatch" > Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney at bccrc.ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada

Does anyone know if the lmer function of lme4 works fine for unbalanced designs? I have the examination results of 1000 pupils on three subjects, one score every term. So, I have three scores for English (one for every term), three scores for maths etc. However, not everybody was examined in maths, not everybody was examined in English etc, but everybody was in effect examined on four subjects. I

...s. =20 I have not yet worked out all the coding details to make this happen, but before I do, am I missing some key point? Any reasons why this would be a Bad Idea? Steven McKinney, Ph.D. Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney +at+ bccrc +dot+ ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada

Full_Name: Lixin Han Version: 2.4.0 OS: Windows 2000 Submission from: (NULL) (155.94.110.222) A character vector c('a','b') is supplied to rm(). As a result, 'c' is deleted unintentionally. > a <- 1:5 > b <- 'abc' > c <- letters > ls() [1] "a" "b" "c" > rm(c('a','b')) > ls() character(0)

...hed packages: [1] nlme_3.1-90 loaded via a namespace (and not attached): [1] grid_2.9.0 lattice_0.17-22 tools_2.9.0 > Also occurs on Windows box with R 2.8.1 Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney +at+ bccrc +dot+ ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada

...ched packages: [1] nlme_3.1-90 loaded via a namespace (and not attached): [1] grid_2.9.0 lattice_0.17-22 tools_2.9.0 Also occurs on Windows box with R 2.8.1 Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney +at+ bccrc +dot+ ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada

On 7/28/2009 6:30 PM, smckinney at bccrc.ca wrote: > Hi all, > > When I install a new package, and don't yet know any function names, > I have to play the "poor man's game" to get to the standard > help system "Index" page for the package: You could complain to the package author or ma...

Dear R gurus, On the CRAN website, it says that a 64bit version for Mac OS Tiger would be release shortly. Do we know what are the expected dates? Will the packages be also compiled for 64bit? We are running large microarray analysis and we keep hitting the 3Gb memory limit. I saw that there is a version available on the development mirrors, but I am not too excited to replace our very stable

...at stats.uwo.ca] > Sent: Tuesday, August 04, 2009 8:03 AM > To: Steven McKinney > Cc: r-devel at stat.math.ethz.ch; R-bugs at r-project.org > Subject: Re: [Rd] Wishlist: Navigate to "Index" page of help when no > topic specified (PR#13860) >=20 > On 7/28/2009 6:30 PM, smckinney at bccrc.ca wrote: > > Hi all, > > > > When I install a new package, and don't yet know any function names, > > I have to play the "poor man's game" to get to the standard > > help system "Index" page for the package: >=20 > You could...

...8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.14.1 > Steven McKinney, Ph.D. Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney +at+ bccrc +dot+ ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada

...such modifications could be done by package:utils developers? Thanks to Herve Pages for his excellent summarization of the issues arising when running biocLite on the Mac. Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney at bccrc.ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada -----Original Message----- From: Herve Pages [mailto:hpages at fhcrc.org] Sent: Tue 7/18/2006 12:51 PM To: Steven McKinney Cc: Bioconductor at stat.math.ethz.ch Subject: Re:...

...thods base loaded via a namespace (and not attached): [1] Matrix_0.999375-16 grid_2.8.0 lattice_0.17-15 lme4_0.99875-9 [5] nlme_3.1-89 > Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney +at+ bccrc +dot+ ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada

...eing included? Have I missed a control parameter or some other way of specifying to model.matrix not to include this extra column? Any feedback appreciated. Best regards Steven McKinney Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney at bccrc.ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada

...Serial Number: G87052SGUPZ System Software Overview: System Version: Mac OS X 10.5.4 (9E17) Kernel Version: Darwin 9.4.0 Boot Volume: Macintosh HD Boot Mode: Normal ----- Original Message ---- From: Matthew Keller <mckellercran at gmail.com> To: Steven McKinney <smckinney at bccrc.ca> Cc: joseph <jdsandjd at yahoo.com>; r-help at r-project.org Sent: Saturday, July 26, 2008 9:15:41 AM Subject: Re: [R] 64-bit R on Mac OS X 10.4.5 Hi Joseph, For what it is worth (which might not be that much!), I have written down step by step instructions on my website for...

...9 8:03 AM > >> To: Steven McKinney > >> Cc: r-devel at stat.math.ethz.ch; R-bugs at r-project.org > >> Subject: Re: [Rd] Wishlist: Navigate to "Index" page of help when no > >> topic specified (PR#13860) > >> > >> On 7/28/2009 6:30 PM, smckinney at bccrc.ca wrote: > >>> Hi all, > >>> > >>> When I install a new package, and don't yet know any function > names, > >>> I have to play the "poor man's game" to get to the standard > >>> help system "Index"...

Is anyone aware of a fast way of doing fisher's exact test for a series of 2 x 2 tables in R? The fisher.test is really slow if n1=1000 and n2 = 1000. -- Thanks, Jim. [[alternative HTML version deleted]]