search for: sib

I have the following binary data set: Sex Response 0 1 0 159 162 1 4 37 My commands library(MASS) sib.glm=glm(sib~sex,family=binomial,data=sib.data) summary(sib.glm) The coefficients in the output are Estimate Std. Error z value Pr(>|z|) (Intercept) -3.6826 0.5062 -7.274 3.48e-13 *** sex 2.2059 0.5380 4.100 4.13e-05 *** I have calculated...

Does anyone know if the sib TDT has been implemented in R 1. Spielman, R.S., and Ewens, W.J. (1998) A sibship test for linkage in the presence of association: the sib transmission/disequilibrium test. Am J Hum Genet 62, 450-458 -- Farrel Buchinsky, MD Pediatric Otolaryngologist Allegheny General Hospital Pittsburgh, PA

Hello, I've searched for an answer to no avail. I am wondering if anyone knows how to constrain certain correlations to be equal. I have family data with 2 twins per family plus up to 2 siblings. I would like to somehow constrain all the sibling correlations (twin-sib and sib-sib) to be the same while allowing the twin-twin correlation to be different. Here is some simulated code: set.seed(5) famdata <- matrix(rnorm(400),ncol=4,dimnames=list(NULL,c("Twin1","Twin2&qu...

hi, i found this code in X86DisassemblerDecoder.h #define EA_BASES_32BIT \ ENTRY(EAX) \ ENTRY(ECX) \ ENTRY(EDX) \ ENTRY(EBX) \ ENTRY(sib) \ ENTRY(EBP) \ ENTRY(ESI) \ ENTRY(EDI) \ ENTRY(R8D) \ ENTRY(R9D) \ ENTRY(R10D) \ ENTRY(R11D) \ ENTRY(R12D) \ ENTRY(R13D) \ ENTRY(R14D) \ ENTRY(R15D) the ENTRY...

Hi, It looks like the problem was with the RIP relative addressing. The original patch mistakenly removed the || DispForReloc part because I tough that the RIP relative addressing was done by the SIB encodings, but it is actually done by the shorter ones. The attached patch seems to work for me on linux and when simulating darwin by forcing some variables in X86TargetMachine.cpp to their darwin values. Zoltan On Tue, May 5, 2009 at 11:17 PM, Zoltan Varga <va...

Hi Zoltan, The part that determines whether SIB byte is needed caused a lot of regressions last night (see Geryon-X86-64 etc.). I've reverted it for now. Please take a look. Thanks, Evan On May 4, 2009, at 3:49 PM, Evan Cheng wrote: > Committed as revision 70929. Thanks. > > Evan > > On May 3, 2009, at 8:29 PM, vargaz...

...or with the encoding of R12/R13, but the code seems to handle the latter, since it checks for ESP/EBP which is the same as R12/R13. Zoltan On Tue, May 5, 2009 at 8:18 PM, Evan Cheng <evan.cheng at apple.com> wrote: > Hi Zoltan, > > The part that determines whether SIB byte is needed caused a lot of > regressions last night (see Geryon-X86-64 etc.). I've reverted it for > now. Please take a look. > > Thanks, > > Evan > > On May 4, 2009, at 3:49 PM, Evan Cheng wrote: > > > Committed as revision 70929. Thanks. > > > &gt...

...gt; On May 1, 2009, at 8:40 AM, Zoltan Varga wrote: > >> Hi, >> >> The attached patch contains the following changes: >> >> * X86InstrInfo.cpp: Synchronize a few places with the code in >> X86CodeEmitter.cpp >> * X86CodeEmitter.cpp: Avoid the longer SIB encoding on amd64 if it >> is not neeed. >> >> Zoltan >> <llvm.diff>_______________________________________________ >> LLVM Developers mailing list >> LLVMdev at cs.uiuc.edu http://llvm.cs.uiuc.edu >> http://lists.cs.uiuc.edu/mailman...

Hi All. This is an RFC for a proposed target specific X86 optimization for reducing code size in the encoding of AVX-512 instructions when possible. When the AVX512F instruction set was introduced in X86 it included additional 32 registers of 512bit size each ZMM0 - ZMM31, as well as additional 16 XMM registers XMM16-XMM31 and 16 YMM registers YMM16-YMM31. In order to encode the new registers of 16-31 and the additional instructions, a new...

Hi, The attached patch contains the following changes: * X86InstrInfo.cpp: Synchronize a few places with the code in X86CodeEmitter.cpp * X86CodeEmitter.cpp: Avoid the longer SIB encoding on amd64 if it is not neeed. Zoltan -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.llvm.org/pipermail/llvm-dev/attachments/20090501/fe30fbd0/attachment.html> -------------- next part -------------- A non-text attachment was scru...

I have an courier IMAP server running. To get sib dirs working I had to rename them all to begin with a period ".". e.g Maildir Maildir/{cur,new,tmp} Maildir/.account1/{cur,new,tmp} Maildir/.account2/{cur,new,tmp} Maildir/.account3/{cur,new,tmp} etc If I uninstall Courier and install dovecot, will these "period" dirs be see...

I am a novice R user, and I am having difficulty understanding R's influence plots. I am trying to remove outliers from a particular variable, "sib." I am able to generate influence plots and further outlier information such as below (which is a shortened example). For my analyses, I end up excluding the points R refers to, 7, 18, 26, and 105. However, my question is, how can I understand which ID numbers these points (7,18,26, and 105) a...

"Vallejo, Roger" <Roger.Vallejo at ARS.USDA.GOV> asked: > I would like to know if we can estimate Rg between two binary traits > (disease status: alive vs. dead) with the R package. > > My data: we have 100 full-sib (FS) families, > and two random samples (each with n= 200 FS fish) from each FS family > were evaluated for disease resistance to two different bacterial > diseases, separately. Both traits are not recorded in the same > individual; both traits are recorded in different full-sibs from a...

...AM, Zoltan Varga wrote: >> >>> Hi, >>> >>> The attached patch contains the following changes: >>> >>> * X86InstrInfo.cpp: Synchronize a few places with the code in >>> X86CodeEmitter.cpp >>> * X86CodeEmitter.cpp: Avoid the longer SIB encoding on amd64 if it >>> is not neeed. >>> >>> Zoltan >>> <llvm.diff>_______________________________________________ >>> LLVM Developers mailing list >>> LLVMdev at cs.uiuc.edu http://llvm.cs.uiuc.edu >>> http://...

hie all i am trying to carry out a categorical data analysis but my problem is that when in i use the chi squared test some of my expected values are less than 5. is there a test that can handle this situation. the data is not a 2*2 table. its more from the social sciences where you have from strongly agree to strongly disagree. i know i can collapse vthe tables but there is a loss of

...s in same page using par(mfrow = c(*,*)). In each plot we can set title using main and sub commands. However, is there any way that we can place an universal title above the set of plots placed in the same page (not individual plot titles, all i need is a title of the whole graph page) as well as sib-titles? Do I need any package to do so? Thank you for your time. Mohammad Ehsanul Karim (R - 2.3.1 on windows) Institute of Statistical Research and Training University of Dhaka

...42 AM > *Subject: *[llvm-dev] RFC: code size reduction in X86 by replacing EVEX > with VEX encoding > > > > Hi All. > > > > This is an RFC for a proposed target specific X86 optimization for > reducing code size in the encoding of AVX-512 instructions when possible. > > > > When the AVX512F instruction set was introduced in X86 it included > additional 32 registers of 512bit size each ZMM0 - ZMM31, as well as > additional 16 XMM registers XMM16-XMM31 and 16 YMM registers YMM16-YMM31. > > In order to encode the new registers of 16-31...

Looks good. Thanks. Evan On May 1, 2009, at 8:40 AM, Zoltan Varga wrote: > Hi, > > The attached patch contains the following changes: > > * X86InstrInfo.cpp: Synchronize a few places with the code in > X86CodeEmitter.cpp > * X86CodeEmitter.cpp: Avoid the longer SIB encoding on amd64 if it > is not neeed. > > Zoltan > <llvm.diff>_______________________________________________ > LLVM Developers mailing list > LLVMdev at cs.uiuc.edu http://llvm.cs.uiuc.edu > http://lists.cs.uiuc.edu/mailman/listinfo/llvmdev

...h. > > These identifiers are not numeric, or not sequential. > > Obviously, an identifier can appear in one or two columns, > depending on whether it was a parent or not. These should > be consistent. > > Not all identifiers appear in the individual column - it > is possible for a parent not to have its own record if its > parents were not known. > > Missing parental (sire and/or dam) identifiers can occur. > > I need to export the data for use in another program that > requires the pedigree to be coded as integers, increasing > with date of bi...

...e under what circumstances these problems occur, but I hope someone might have some idea... thanks -- Ivan Ivanyi Swiss Institute of Bioinformatics 1, rue Michel Servet CH-1211 Gen?ve 4 Switzerland Tel: (+41 22) 702 58 33 Fax: (+41 22) 702 58 58 E-mail: Ivan.Ivanyi@isb-sib.ch