search for: shlib_fflags

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

...pgf90 F77= d:/PGI/win64/18.10/bin/pgf90 CC = d:/PGI/win64/18.10/bin/pgcc FFLAGS= -Ld:/PGI/win64/18.10/bin/pgf90.dll -Ld:/PGI/win64/18.10/bin/pgc14.dll FLIBS= -Ld:/PGI/win64/18.10/bin/pgf90.dll -Ld:/PGI/win64/18.10/bin/pgc14.dll PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) MPI_FFLAGS= -Mmpi=msmpi SHLIB_FFLAGS= -Mmakedll CUDA_FFLAGS=-acc -Minfo=accel -Mlarge_arrays -Ld:/PGI/win64/18.10/bin/pgf90.dll -Ld:/PGI/win64/18.10/bin/pgc14.dll DLLCUDA_FFLAGS=-ta=tesla:nordc -Ld:/PGI/win64/18.10/lib/acc_init_link_cuda.obj -Ld:/PGI/win64/18.10/lib/libaccapi.lib -Ld:/PGI/win64/18.10/lib/libaccg.lib -Ld:/PGI/win64/...

...rsion is: g++ (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5) 2) the SHLIB file is the same, but some difference in /usr/local/lib/R/etc/Makeconf: SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = g77 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc -std=gnu99 SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) what should I do? thanks, xinan

I am running into the following issue that has been previously reported on the R-devel mailing list. The short version is that I'm writing a package for MPI, and I'd like to change CC and SHLIB_LD to "mpicc". Trying to change them in Makevars.in has no effect, because the values are clobbered by /etc/R/Makeconf. Will the following changes to Makeconf.in introduce any problems?

...IC F2C = F2CFLAGS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- R...

...IC F2C = F2CFLAGS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- R...

Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

...and "" otherwise. FFLAGS="-xO5 -dalign -xlic_lib=sunperf" # The following additional FFLAGS to be used only in the main compilation # and only in building shared libraries respectively. For example, # on some systems one needs MAIN_FFLAGS=-pg when profiling. # MAIN_FFLAGS= # SHLIB_FFLAGS= # The command to be used to load the main R binary. # This is usually the FORTRAN or C compiler, but the automatic choice # can be overriden by means of this variable. # MAIN_LD= # The flags which are necessary for loading main program which will load # DLLs at runtime. HP-UX and Linux-elf are...

...sing -ffloat-store. ## SAFE_FFLAGS= SAFE_FFLAGS="-g" ## The following additional FFLAGS to be used only in the main ## compilation and only in building shared libraries respectively. ## For example, on some systems one needs 'MAIN_FFLAGS=-pg' when ## profiling. ## MAIN_FFLAGS= ## SHLIB_FFLAGS= ## The command to be used to load the main R binary. ## This is usually the FORTRAN 77 or C compiler, but the automatic ## choice can be overriden by means of this variable. ## MAIN_LD= ## The flags which are necessary for loading main program which will ## load DLLs at runtime. HP-UX and Linux...

...env_SHLIB_CFLAGS_set= ac_cv_env_SHLIB_CFLAGS_value= ac_cv_env_SHLIB_CXXLDFLAGS_set= ac_cv_env_SHLIB_CXXLDFLAGS_value= ac_cv_env_SHLIB_CXXLD_set= ac_cv_env_SHLIB_CXXLD_value= ac_cv_env_SHLIB_FCD_set= ac_cv_env_SHLIB_FCD_value= ac_cv_env_SHLIB_FCLDFLAGS_set= ac_cv_env_SHLIB_FCLDFLAGS_value= ac_cv_env_SHLIB_FFLAGS_set= ac_cv_env_SHLIB_FFLAGS_value= ac_cv_env_SHLIB_LDFLAGS_set= ac_cv_env_SHLIB_LDFLAGS_value= ac_cv_env_SHLIB_LD_set= ac_cv_env_SHLIB_LD_value= ac_cv_env_TCLTK_CPPFLAGS_set= ac_cv_env_TCLTK_CPPFLAGS_value= ac_cv_env_TCLTK_LIBS_set= ac_cv_env_TCLTK_LIBS_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_v...

...ecified, defaults to "-O2" for g77, and "" otherwise. #FFLAGS= # The following additional FFLAGS to be used only in the main compilation # and only in building shared libraries respectively. For example, # on some systems one needs MAIN_FFLAGS=-pg when profiling. # MAIN_FFLAGS= SHLIB_FFLAGS=-G # The command to be used to load the main R binary. # This is usually the FORTRAN or C compiler, but the automatic choice # can be overriden by means of this variable. MAIN_LD=/Net/local/bin/cc # The flags which are necessary for loading main program which will load # DLLs at runtime. HP-UX a...

...ac_cv_env_R_PAPERSIZE_set= ac_cv_env_R_PAPERSIZE_value= ac_cv_env_R_PRINTCMD_set= ac_cv_env_R_PRINTCMD_value= ac_cv_env_SHLIB_CFLAGS_set= ac_cv_env_SHLIB_CFLAGS_value= ac_cv_env_SHLIB_CXXLDFLAGS_set= ac_cv_env_SHLIB_CXXLDFLAGS_value= ac_cv_env_SHLIB_CXXLD_set= ac_cv_env_SHLIB_CXXLD_value= ac_cv_env_SHLIB_FFLAGS_set= ac_cv_env_SHLIB_FFLAGS_value= ac_cv_env_SHLIB_LDFLAGS_set= ac_cv_env_SHLIB_LDFLAGS_value= ac_cv_env_SHLIB_LD_set= ac_cv_env_SHLIB_LD_value= ac_cv_env_TCLTK_CPPFLAGS_set= ac_cv_env_TCLTK_CPPFLAGS_value= ac_cv_env_TCLTK_LIBS_set= ac_cv_env_TCLTK_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_b...

...ac_cv_env_R_PAPERSIZE_set= ac_cv_env_R_PAPERSIZE_value= ac_cv_env_R_PRINTCMD_set= ac_cv_env_R_PRINTCMD_value= ac_cv_env_SHLIB_CFLAGS_set= ac_cv_env_SHLIB_CFLAGS_value= ac_cv_env_SHLIB_CXXLDFLAGS_set= ac_cv_env_SHLIB_CXXLDFLAGS_value= ac_cv_env_SHLIB_CXXLD_set= ac_cv_env_SHLIB_CXXLD_value= ac_cv_env_SHLIB_FFLAGS_set= ac_cv_env_SHLIB_FFLAGS_value= ac_cv_env_SHLIB_LDFLAGS_set= ac_cv_env_SHLIB_LDFLAGS_value= ac_cv_env_SHLIB_LD_set= ac_cv_env_SHLIB_LD_value= ac_cv_env_TCLTK_CPPFLAGS_set= ac_cv_env_TCLTK_CPPFLAGS_value= ac_cv_env_TCLTK_LIBS_set= ac_cv_env_TCLTK_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_b...

Hello Everyone,   Learning about R and its wonderful array of functions. If it's not obvious, I usually try to find out what a function stands for. I think this helps me remember better.   One function that has me stumped is "sink." Can anyone tell me if this stands for something?   Thanks,   Paul         __________________________________________________ [[alternative HTML