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I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

...LAGS=-O export FFLAGS="-O4 -xlibmopt -libmil -xvector=lib -fround=nearest" export FCFLAGS=$FFLAGS export LDFLAGS="-L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9" export SHLIB_CXXLDFLAGS="-G -lCstd" export BLAS_LIBS=-xlic_lib=sunperf export LIBS="-lmvec" export SHLIB_CFLAGS=-lmvec and: ./configure --prefix=/opt/R-2.8.1 --enable-threads=solaris --with-blas Could you please help me to pinpoint the problem. Thanks -- Mohammad

blktap2: fix makefile of vhd for parallel make With parallel make, libvhd might not be created before link resulting in link error. This patch guarantees it. Signed-off-by: Isaku Yamahata <yamahata@valinux.co.jp> diff --git a/tools/blktap2/vhd/Makefile b/tools/blktap2/vhd/Makefile --- a/tools/blktap2/vhd/Makefile +++ b/tools/blktap2/vhd/Makefile @@ -12,6 +12,9 @@ CFLAGS +=

...as described in: https://stat.ethz.ch/pipermail/bioc-devel/2007-June/001168.html But, My condition is some how different: 1) my g++ version is: g++ (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5) 2) the SHLIB file is the same, but some difference in /usr/local/lib/R/etc/Makeconf: SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = g77 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc -std=gnu99 SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) what should I do? thanks, xinan

I am trying to compile R on Linux using SunStudio. Configure flags are mostly as suggested in the R install guide. CC=/opt/sun/sunstudio12.1/bin/suncc CFLAGS="-g -xc99 -xlibmil -xlibmieee" MAIN_CFLAGS=-g SHLIB_CFLAGS=-g CPPFLAGS="-I. -I/opt/sun/sunstudio12.1/prod/include -I/opt/sun/sunstudio12.1/prod/include/cc" CPPFLAGS+="-I/opt/sun/sunstudio12.1/prod/include/cc/sys -I/usr/local/include" F77=/opt/sun/sunstudio12.1/bin/sunf95 FFLAGS="-g -O -libmil " SAFE_FFLAGS="-g -libmil&quo...

I am running into the following issue that has been previously reported on the R-devel mailing list. The short version is that I'm writing a package for MPI, and I'd like to change CC and SHLIB_LD to "mpicc". Trying to change them in Makevars.in has no effect, because the values are clobbered by /etc/R/Makeconf. Will the following changes to Makeconf.in introduce any problems?

...77 FFLAGS = -g -O2 FLIBS = -lg2c -lm -L/usr/lib/gcc-lib/i386-linux/2.95.4 -lm FPICFLAGS = -fPIC F2C = F2CFLAGS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-....

...77 FFLAGS = -g -O2 FLIBS = -lg2c -lm -L/usr/lib/gcc-lib/i386-linux/2.95.4 -lm FPICFLAGS = -fPIC F2C = F2CFLAGS = LIBM = -lm LIBR = -L$(R_HOME)/bin -lR LIBS = -L/usr/local/lib -lz -lreadline -ldl -lncurses -lm LIBPATHS = -L/usr/local/lib LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = c++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = so SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -- Jonathan Q. Li, PhD Agilent Technologies Laboratory Palo Alto, California, USA -.-.-.-.-....

Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

..." in all # other cases. CFLAGS="-xO5 -dalign -xlic_lib=sunperf" # The following additional CFLAGS to be used only in the main compilation # and only in building shared libraries respectively. For example, # on some systems one needs MAIN_CFLAGS=-pg when profiling. # MAIN_CFLAGS= # SHLIB_CFLAGS= # Header file search directory (`-IDIR') and any other miscellaneous # options for the C preprocessor and compiler. # If unset defaults to `-I/usr/local/include'. CPPFLAGS="-I/usr/local/include -I/export/home/share/include" # The command which runs the the FORTRAN compiler. #...

...compilation of R, ## e.g. -DUSE_TYPE_CHECKING_STRICT ## DEFS= ## The following additional CFLAGS to be used only in the main ## compilation and only in building shared libraries respectively. ## For example, on some systems one needs 'MAIN_CFLAGS=-pg' when ## profiling. ## MAIN_CFLAGS= ## SHLIB_CFLAGS= ## Header file search directory ('-IDIR') and any other miscellaneous ## options (such as defines) for the C preprocessor and compiler. ## If unset defaults to '-I/usr/local/include', with '-I/sw/include' ## prepended on systems using Fink with root '/sw'. ## CPPFL...

Hello, I am new in R and I am delighted with it, so I am trying to bulid R-1.3.0 from sources under HP-UX 11.00 using f2c and X11 support. Configuration phase is OK but using make I have errors: gcc -Wl,-E -o R.bin CConverters.o Rdynload.o RNG.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o charac ter.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o

Hello, I am new in R and I am delighted with it, so I am trying to bulid R-1.3.0 from sources under HP-UX 11.00 using f2c and X11 support. Configuration phase is OK but using make I have errors: gcc -Wl,-E -o R.bin CConverters.o Rdynload.o RNG.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o charac ter.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o

...value= ac_cv_env_R_BATCHSAVE_set= ac_cv_env_R_BATCHSAVE_value= ac_cv_env_R_BROWSER_set= ac_cv_env_R_BROWSER_value= ac_cv_env_R_PAPERSIZE_set=set ac_cv_env_R_PAPERSIZE_value=letter ac_cv_env_R_PRINTCMD_set= ac_cv_env_R_PRINTCMD_value= ac_cv_env_SAFE_FFLAGS_set= ac_cv_env_SAFE_FFLAGS_value= ac_cv_env_SHLIB_CFLAGS_set= ac_cv_env_SHLIB_CFLAGS_value= ac_cv_env_SHLIB_CXXLDFLAGS_set= ac_cv_env_SHLIB_CXXLDFLAGS_value= ac_cv_env_SHLIB_CXXLD_set= ac_cv_env_SHLIB_CXXLD_value= ac_cv_env_SHLIB_FCD_set= ac_cv_env_SHLIB_FCD_value= ac_cv_env_SHLIB_FCLDFLAGS_set= ac_cv_env_SHLIB_FCLDFLAGS_value= ac_cv_env_SHLIB_FFLAGS_set...

..."-g -O2" for gcc, and "-g" in all # other cases. CFLAGS=-g # The following additional CFLAGS to be used only in the main compilation # and only in building shared libraries respectively. For example, # on some systems one needs MAIN_CFLAGS=-pg when profiling. # MAIN_CFLAGS= # SHLIB_CFLAGS= # Header file search directory (`-IDIR') and any other miscellaneous # options for the C preprocessor and compiler. # If unset defaults to `-I/usr/local/include'. # CPPFLAGS= # The command which runs the the FORTRAN compiler. # If unspecified, a search is made for g77, f77, xlf, cf77, cf...

...set= ac_cv_env_MAIN_LD_value= ac_cv_env_MAKE_set= ac_cv_env_MAKE_value= ac_cv_env_R_BATCHSAVE_set= ac_cv_env_R_BATCHSAVE_value= ac_cv_env_R_BROWSER_set= ac_cv_env_R_BROWSER_value= ac_cv_env_R_PAPERSIZE_set= ac_cv_env_R_PAPERSIZE_value= ac_cv_env_R_PRINTCMD_set= ac_cv_env_R_PRINTCMD_value= ac_cv_env_SHLIB_CFLAGS_set= ac_cv_env_SHLIB_CFLAGS_value= ac_cv_env_SHLIB_CXXLDFLAGS_set= ac_cv_env_SHLIB_CXXLDFLAGS_value= ac_cv_env_SHLIB_CXXLD_set= ac_cv_env_SHLIB_CXXLD_value= ac_cv_env_SHLIB_FFLAGS_set= ac_cv_env_SHLIB_FFLAGS_value= ac_cv_env_SHLIB_LDFLAGS_set= ac_cv_env_SHLIB_LDFLAGS_value= ac_cv_env_SHLIB_LD_set=...

...et= ac_cv_env_MAIN_LDFLAGS_value= ac_cv_env_MAIN_LD_set= ac_cv_env_MAIN_LD_value= ac_cv_env_MAKE_set= ac_cv_env_MAKE_value= ac_cv_env_R_BATCHSAVE_set= ac_cv_env_R_BATCHSAVE_value= ac_cv_env_R_PAPERSIZE_set= ac_cv_env_R_PAPERSIZE_value= ac_cv_env_R_PRINTCMD_set= ac_cv_env_R_PRINTCMD_value= ac_cv_env_SHLIB_CFLAGS_set= ac_cv_env_SHLIB_CFLAGS_value= ac_cv_env_SHLIB_CXXLDFLAGS_set= ac_cv_env_SHLIB_CXXLDFLAGS_value= ac_cv_env_SHLIB_CXXLD_set= ac_cv_env_SHLIB_CXXLD_value= ac_cv_env_SHLIB_FFLAGS_set= ac_cv_env_SHLIB_FFLAGS_value= ac_cv_env_SHLIB_LDFLAGS_set= ac_cv_env_SHLIB_LDFLAGS_value= ac_cv_env_SHLIB_LD_set=...

Hello Everyone,   Learning about R and its wonderful array of functions. If it's not obvious, I usually try to find out what a function stands for. I think this helps me remember better.   One function that has me stumped is "sink." Can anyone tell me if this stands for something?   Thanks,   Paul         __________________________________________________ [[alternative HTML