search for: shephard

...same syntax as the eigth line reported by traceback() that causes the error. I can provide the scripts if required, but have not included them here as this msg is going to a list. I'm not much of an expert with S-plus or R, and any help would be appreciated. Thanks in advance, Neil Neil Shephard Genetics Statistician ARC Epidemiology Unit, University of Manchester neil.shephard at man.ac.uk neil.shephard at mindless.com "Contrariwise, if it was so, it might be; and if it were so it would be; but as it isn't, it ain't. That's logic" - Tweedledee (Alice Through the Loo...

...' file is being read by R that is causing this, but I'm not sure. Can anyone see any potential problems with the read.table() and write.table() functions in the above script file??? Thanks again to all who offered help, and in anticipation of responses to this msg, Regards Neil Neil Shephard Genetics Statistician ARC Epidemiology Unit, University of Manchester neil.shephard at man.ac.uk neil.shephard at mindless.com "Contrariwise, if it was so, it might be; and if it were so it would be; but as it isn't, it ain't. That's logic" - Tweedledee (Alice Through the Loo...

Can R handle graphic text ? I mean something like a pop-up message window or a text widget ? Thank you so much. -- Maura E.M

...tries on precedence, but can't work out why the above is happening? Whats particularly perplexing (to me) is that the test for exact equality works, but not for inequality? I feel like I'm missing something blatantly obvious, but can't work out what it is. Cheers, Neil -- Email - nshephard at gmail.com / n.shephard at sheffield.ac.uk

...rt already). Something similar has been done for Perl/CPAN (see http://www.gentoo.org/proj/en/perl/g-cpan.xml) and this may be an option for CRAN. Any and all comments and thoughts are more than welcome. Regards Neil -- "Don't remember what you can infer." - Harry Tennant Email - nshephard at gmail.com / n.shephard at sheffield.ac.uk Website - http://slack.ser.man.ac.uk/ Photos - http://www.flickr.com/photos/slackline/ -- "Don't remember what you can infer." - Harry Tennant Email - nshephard at gmail.com / n.shephard at sheffield.ac.uk Website - http://slack.ser.ma...

I am posting this to both R and BioC communities because I believe there is a lot of confusion on this topic in both communities (having searched the mail archives of both) and I am hoping that someone will have information that can be shared with both communities. I have seen countless questions on the BioC list regarding limma (Bioconductor) and its calculation of FDR. Some of them involved

I am posting this to both R and BioC communities because I believe there is a lot of confusion on this topic in both communities (having searched the mail archives of both) and I am hoping that someone will have information that can be shared with both communities. I have seen countless questions on the BioC list regarding limma (Bioconductor) and its calculation of FDR. Some of them involved

...um measures, one of which is R^2 (the correlation coefficient between loci), but I suspect you could simply pass it a matrix of correlation coefficents. Hope that helps, Neil -- "In mathematics you don't understand things. You just get used to them." - Johann von Neumann Email - nshephard at gmail.com / n.shephard at sheffield.ac.uk Website - http://slack.ser.man.ac.uk/ Photos - http://www.flickr.com/photos/slackline/

Hi folks, I was wondering if anyone could confirm/deny whether there exists any kind of package to facilitate zoomable graphs with multiple plots (eg, plot(..) and then points(..)). I've tried zoom from IDPmisc, and iplot from the iplot and iplot extreme packages, but as far I can tell, neither can handle the task. Does anyone know anything else that might work? Or generally know

...me + SNP + Pool), but how would there be a negative index in this data? I had previously melted the data into this format. Apologies for not providing a reproducible example, I suspect the problem lies within the data structure I'm using. Thanks for reading this question, Neil -- Email - nshephard at gmail.com / n.shephard at sheffield.ac.uk Photos - http://www.flickr.com/photos/slackline/

Hello to everyone! I have built CRAN task view for genetics. For now I have not submit it to CRAN yet and it can be accessible from: http://www.bfro.uni-lj.si/MR/ggorjan/software/R/Genetics.html http://www.bfro.uni-lj.si/MR/ggorjan/software/R/Genetics.ctv I have not submitted it to CRAN, since I would like first some opinion about it. Genetics is really so broad field that I belive one person

The CRAN Taskviews (http://cran.r-project.org/web/packages/Views/) is currently unavailable and returns 404 Object not found! This is possibly due to them now being linked from the side frame and the URL now being http://cran.r-project.org/web/views/ Unfortunately the webmaster link on the 404 page does not have any email address associated with it, hence the mail to the list. Neil -- View

...n at shakabuku.org http://www.shakabuku.org "You want free speech? Let's see you acknowledge a man whose words make your blood boil who is standing center stage advocating at the top of his lungs that which you would spend a lifetime opposing at the top of yours." -- President Andrew Shephard, "The American President"

...latform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 2 minor 2.1 year 2005 month 12 day 20 svn rev 36812 language R -- "Once, adv. - Enough Twice, adv. - Once too often" - Ambrose Bierce, The Devil's Dictionary Email - nshephard at gmail.com Website - http://slack.ser.man.ac.uk/ Blog - http://slack---line.blogspot.com/ Flickr - http://www.flickr.com/photos/slackline/

...is what you want, but you may find the GDD package useful. I use it to generate graphs when I run scripts remotely or via batches and don't have a graphical display. Neil -- "In mathematics you don't understand things. You just get used to them." - Johann von Neumann Email - nshephard at gmail.com / n.shephard at sheffield.ac.uk Website - http://slack.ser.man.ac.uk/ Photos - http://www.flickr.com/photos/slackline/

As far as I know there isn't anything available for this, but I thought I'd check before working up something of my own. Is there a way to query Amazon SimpleDB and import the data results directly into R? Cheers, Tim.

Dear R Users, Does anyone know of a package which can generate random realisations of a double-exponential jump diffusion process with a drift ? Something where I can specify the likelihoods of an up or a down jump, the drift rate, and the mean size, and get back a vector of realisation of the process (for purposes of a Monte-Carlo). Kind regards, Tolga

Hi, I have decided against coding my planned Braceless compiler in C++ and have instead opted for using the .NET bindings that Keith Shephard have made using F# (a .NET language). This leads to two questions: 1. Is it okay if I adapt the Kalaidoscope tutorial to C# and we include the adapted version in the LLVM.NET distro and on the LLVM.NET website? I have written very clearly that Chris Lattner wrote the article and that I am to...

...1/1 <NA> 1/2 2/2 4 2/2 1/1 2/2 2/2 1/1 2/2 In the above the data has been converted to genotypes. -- "In mathematics you don't understand things. You just get used to them." - Johann von Neumann Email - nshephard at gmail.com / n.shephard at sheffield.ac.uk Website - http://slack.ser.man.ac.uk/ Photos - http://www.flickr.com/photos/slackline/

Hi there, I hope to draw a plot like this: http://www.sg-chem.net/swizard/Ru-bqdi-spectra.gif is it possible to draw it using R? thanks for any suggestions. regards, Jinsong