search for: sfalcon

Hi all, I'm trying to build from source on Linux and getting the following error when it tries to build the help for 'nlme': <snip> ranef.lme text html latex example reStruct text html latex example /home/sfalcon/sw/R-related/R-1.8.1/bin/INSTALL: line 1: 8133 Segmentation fault ${R_CMD} perl "${R_HOME}/share/perl/build-help.pl" ${build_help_opts} "${pkg_dir}" "${lib}" "${R_PACKAGE_DIR}" "${pkg_name}" ERROR: building help failed for package 'nlme...

...In method for function "!": formal arguments omitted in the method definition cannot be in the signature (x = "Matrix") Error: unable to load R code in package 'Matrix' Execution halted ERROR: lazy loading failed for package 'Matrix' ** Removing '/home/sfalcon/RLIBS/2.5/Matrix' ** Restoring previous '/home/sfalcon/RLIBS/2.5/Matrix' The downloaded packages are in /tmp/RtmpcEQJjw/downloaded_packages Warning message: installation of package 'Matrix' had non-zero exit status in: install.packages(pkgs = pkgs, repos = repos, depend...

Hi, While running R CMD build on one of the Bioc packages, I'm getting the following error message * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source files Can't call method "print" on an undefined value at /home/sfalcon/arch/x86_64/R-2.3/bin/build line 646. The pacakge has CRLF line endings in source files. > R.version _ platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu...

I'm looking for ideas for creating high-quality plots for use in projected presentations (powerpoint, etc) --- ideally high-quality png, jpg, bmp. The graphics produced using the postscript device look very good. Those generated with win.graph(), png are plagued by the jaggy lines. So far, the only way I can use the postscript plots in my presentations is using separate screen capture

...atabase where function(f, where = topenv(parent.frame())) { - mname <- mlistMetaName(f, where) + mname <- mlistMetaName(f, getPackageName(where)) if(exists(mname, where = where, inherits = missing(where))) get(mname, where) else Seth Falcon <sfalcon at fhcrc.org> writes: > cstrato <cstrato at aon.at> writes: > >> Dear all, >> >> What is the best way to write the docs for S4 classes? >> >> Concretely, is it possible to include the methods in the class >> documentation? >> For example,...

Hi all, One of the things I find most problematic in R is the partial matching of names in lists. Robert and I have discussed this and we believe that having a mechanism that does not do partial matching would be of significant benefit to R programmers. To that end, I have written a patch that modifies the behavior of "[[" as follows: 1. [[ gains an 'exact' argument with

Hi all, I've added a new package 'weaver' to the BioC repository: http://www.bioconductor.org/packages/1.9/bioc/html/weaver.html The weaver package provides extensions to the Sweave utilities included in R's base package. The focus of the extensions is on caching computationally expensive (time consuming) code chunks in Sweave documents. Why would you want to cache code

...ndPreparedQuery. The return value is the same as rbind'ing the results of the individual queries. This means that parameters that return no results are ignored in the result. Full NEWS items available here: http://cran.r-project.org/web/packages/RSQLite/NEWS + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...k on process ID for the manager handle. This should make use of RSQLite with the multicore package easier. * RSQLite now depends on R >= 2.10.0 You can read more details about these and other changes here: http://cran.r-project.org/web/packages/RSQLite/NEWS + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...uartile. RSQLite has been modified to provide the SQLite header files in the installed include directory so that RSQLite.extfuns (and other packages wishing to provide SQLite extension functions) can use LinkingTo. The default value of loadable.extensions is now TRUE. + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...s Ruuid in Depends. If I also have SaveImage: Yes, then R CMD check completes without error. However, if I omit SaveImage, then I get this: $ R CMD check graph WARNING: ignoring environment value of R_HOME * checking for working latex ... OK * using log directory * '/home/sfalcon/proj-svn-unix/graph-proj/graph.Rcheck' * checking for file 'graph/DESCRIPTION' ... OK * checking if this is a source package ... OK * Installing *source* package 'graph' ... ** libs make: `graph.so' is up to date. ** R ** data ** inst **...

Hi all, I've added a new package 'weaver' to the BioC repository: http://www.bioconductor.org/packages/1.9/bioc/html/weaver.html The weaver package provides extensions to the Sweave utilities included in R's base package. The focus of the extensions is on caching computationally expensive (time consuming) code chunks in Sweave documents. Why would you want to cache code

Again i have problem in locating the package for clique-graphs I tried with BioConductor under Browse for packages, it doesn't work atall. Kindly guid me Thanks JJ On 8/23/06, Seth Falcon <sfalcon@fhcrc.org> wrote: > > "j.joshua thomas" <researchjj@gmail.com> writes: > > > Dear Robert, > > > > Thanks for your time. > > I have downloaded Rgraphviz (windows binary) from www.bioconductor.org > > and put inside R2.3.0 library then i inst...

Sorry mistake from me. This was another problem in my mind , but with RMySQL. Christian > library(RMySQL) > library(sqldf) > sqldf("Select * from mtcars") Fehler in mysqlNewConnection(drv, ...) : RS-DBI driver: (Failed to connect to database: Error: Access denied for user 'user'@'localhost' (using password: NO) ) Fehler in if (dbname ==

...ndPreparedQuery. The return value is the same as rbind'ing the results of the individual queries. This means that parameters that return no results are ignored in the result. Full NEWS items available here: http://cran.r-project.org/web/packages/RSQLite/NEWS + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...k on process ID for the manager handle. This should make use of RSQLite with the multicore package easier. * RSQLite now depends on R >= 2.10.0 You can read more details about these and other changes here: http://cran.r-project.org/web/packages/RSQLite/NEWS + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...uartile. RSQLite has been modified to provide the SQLite header files in the installed include directory so that RSQLite.extfuns (and other packages wishing to provide SQLite extension functions) can use LinkingTo. The default value of loadable.extensions is now TRUE. + seth -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...to 40000. Use of wide tables is not encouraged. The default values for SQLite are 2000 and 999, respectively. Databases containing tables with more than 2000 columns may not be compatible with versions of SQLite compiled with default settings. - Upgrade to SQLite 3.7.9. -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

...to 40000. Use of wide tables is not encouraged. The default values for SQLite are 2000 and 999, respectively. Databases containing tables with more than 2000 columns may not be compatible with versions of SQLite compiled with default settings. - Upgrade to SQLite 3.7.9. -- Seth Falcon | @sfalcon | http://userprimary.net/ _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

I've been experimenting with install.packages and it's new ability to track down dependencies from a list of repositories and encountered this: install.packages(c("foo", "bar"), repos="http://cran.r-project.org", dependencies=c("Depends", "Suggests")) dependencies 'foo' are not availabledependencies 'bar'