search for: seriation

Hello R experts, I am trying to use hmap from package seriation or bertinplot. I have two questions: How can I specify smaller font? I tried with pushViewport(viewport(layout=grid.layout(nrow = 1, ncol = 2), + gp = gpar(fontsize = 8))) but didn't work for the font with bertinplot. Also for hmap I need to arrange the margin so that all the labels are visibl...

...or, give me "median", "mean", "Var" and "length" togheter? 3.)Find the minimum of this function: f(x)=(x-3)^4 with the Newton method. 4.) Define a function that is able to calculate the geometric mean of a seriation: Sorry for all these questions... Thanks a lot!!!... -- View this message in context: http://www.nabble.com/Help-me...%21%21%21-tp23724167p23724167.html Sent from the R help mailing list archive at Nabble.com.

On a Windows computer (other platforms not tested), installing a package from source may fail if the environment variable R_ICU_LOCALE is set, depending on the package and the locale. For example, after setting R_ICU_LOCALE to "fi_FI", install.packages("seriation", type = "source") (package version 1.2-3) fails with the following error: ** preparing package for lazy loading Error in set_criterion_method("dist", "AR_events", criterion_ar_events, : could not find function "set_criterion_method" Error : unable...

...a Windows computer (other platforms not tested), installing a > package from source may fail if the environment variable R_ICU_LOCALE > is set, depending on the package and the locale. > > For example, after setting R_ICU_LOCALE to "fi_FI", > > install.packages("seriation", type = "source") > > (package version 1.2-3) fails with the following error: > > ** preparing package for lazy loading > Error in set_criterion_method("dist", "AR_events", criterion_ar_events, : > could not find function "set_criterion_...

Dear R Developers, For package seriation I use Fortran code. I recently got a request to add #if defined(__ICC) || defined(__INTEL_COMPILER) USE IFPORT #endif to the code since the Intel Fortran compiler otherwise has problems with rand(). However, to enable the FPP preprocessor I have to either add a compiler flag (-cpp for gF...

I am working with transition matrices of sequences of animal behaviours. What I would like to do is parse the original matrices, adjusting row/column order so that the matrix has its main values in blocks surrounding the diagonal. This would cause behaviours involved in functional groupings (e.g. grooming, resting, foraging etc) to appear as blocks. This can be done manually by applying

...have a set of nodes and a dissimilarity matrix for them, as well as a csv file in which the diss matrix has been converted to [node_1, node_2, dissimilarity] format. I would like to visualize this as a graph in Euclidean space (that is, similar nodes clumped together in clusters), rather than the seriation visualization given by dissplot(). I am using Network WorkBench for my visualizations and thus want the R output to be in graphml. If I use, say, graph.data.frame(), it will read the dissimilarity column as an edge attribute rather than as distance between nodes, which is what I want. How should...

Hello: I have a tab delim file with 100 rows and 100 columns. I have numerical values in this table. What I want is to create an image color map with color gradation. my values range from -5 to 0. max value is 0. to acheive this, I need to convert my data.frame into matrix. I tried following : mydf <- read.table('mytable',sep='\t',header=T) mydf1 <- mydf[,2:100]

...?ape?, ?flexmix?, ?rmeta?, ?lpSolve?, ?quadprog?, ?relations?, ?TSP?, ?RSQLite?, ?graph?, ?spam?, ?spatstat?, ?PBSmapping?, ?RArcInfo?, ?logspline?, ?plm?, ?sem?, ?rgenoud?, ?snowFT?, ?mboost?, ?fUtilities?, ?Formula?, ?ineq?, ?mlogit?, ?np?, ?pscl?, ?sampleSelection?, ?urca?, ?HSAUR?, ?clue?, ?seriation?, ?multicore?, ?igraph?, ?biglm?, ?scatterplot3d?, ?robustbase?, ?mix?, ?spdep?, ?maptools?, ?tkrplot?, ?rgl?, ?sgeostat?, ?mapproj?, ?tcltk2?, ?tree?, ?maps?, ?quantreg?, ?oz?, ?sp?, ?DBI?, ?VGAM?, ?MCMCpack?, ?coda?, ?gee?, ?systemfit?, ?anchors?, ?survey?, ?mlmRev?, ?MEMSS?, ?numDeriv?, ?ergm...

...2), samplesize (0.1-7), samr (1.28), sapa (1.0-3), scaleboot (0.3-3), sciplot (1.0-7), scout (1.0.2), scrime (1.2.0), sdcTable (0.0.12), SDMTools (1.1), seacarb (2.3.4), seas (0.3-9), seewave (1.5.8), segclust (0.76), segmented (0.2-7.1), SEL (1.0-2), sem (0.9-20), sendplot (3.8.6), seqinr (2.0-9), seriation (1.0-2), sets (1.0-6), simFrame (0.2), simone (1.0-0), simPopulation (0.1.2), SIS (0.5), SiZer (0.1-2), skmeans (0.1-5), slam (0.1-13), sm (2.2-4.1), smacof (1.0-1), smoothSurv (0.7), sn (0.4-15), sna (2.1-0), snowfall (1.84), snowFT (1.2-0), som (0.3-5), someKfwer (1.1), sos (1.3-0), sp (0.9-65),...