search for: selectedvar

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2013 Jul 06
1
problem with BootCV for coxph in pec after feature selection with glmnet (lasso)
...ambda[max.dev.index] # take beta for optimal lambda optimal.beta <- glmnet.obj$beta[,max.dev.index] # find non zero beta coef nonzero.coef <- abs(optimal.beta)>0 selectedBeta <- optimal.beta[nonzero.coef] # take only covariates for which beta is not zero selectedVar <- predict_matrix[,nonzero.coef] # create a dataframe for trainSet with time, status and selected variables in binary representation for evaluation in pec reformat_dataSet <- as.data.frame(cbind(surv_obj,selectedVar)) # create coxph object with pre-defined coefficients glmne...
2002 Feb 11
0
read.table in TCL/TK interface
...nFile with the R function read.table to select in userfriendly way data sets ? (I'm newbie and take code-parts from t-test example and scripting example.) (2) Is it possible to use a variableSelection widget to select a special variable which i can use to replace in R commands like: rpart( selectedVar ~.,data) ? (3) What occur the difference run tcl/tk code in R-Winedt , i get the results only when i use paste ! $ source("D:/Statsoft/rw1041/code/TCL-TK.R") ****************************************************** The source for this demo can be found in the file: D:/Statsoft/rw1041/...