search for: sapien

> chromosomes id refseq name length 1 0 NC_000001.9 Homo sapiens chromosome 1 247249719 2 1 NC_000002.10 Homo sapiens chromosome 2 242951149 3 2 NC_000003.10 Homo sapiens chromosome 3 199501827 4 3 NC_000004.10 Homo sapiens chromosome 4 191273063 5 4 NC_000005.8 Homo sapiens chromosome 5 180857866 6 5 NC_000006.10 Homo sapiens chromosome 6 17089...

Through converting a miRNAs file from FASTA to character format I get a vector which looks like the following: > nml [1] "hsa-let-7a MIMAT0000062 Homo sapiens let-7a" [2] "hsa-let-7b MIMAT0000063 Homo sapiens let-7b" [3] "hsa-let-7c MIMAT0000064 Homo sapiens let-7c" [4] "hsa-let-7d MIMAT0000065 Homo sapiens let-7d" [5] "hsa-let-7e MIMAT0000066 Homo sapiens le...

I have the following vector of strings (shown only the first 3 elements) > desc[1:3] [1] "hsa-let-7a MIMAT0000062 Homo sapiens let-7a" [2] "hsa-let-7a* MIMAT0004481 Homo sapiens let-7a*" [3] "hsa-let-7a-2* MIMAT0010195 Homo sapiens let-7a-2*" > is.vector(desc) [1] TRUE > A <- unlist(strsplit(desc[1:3], " ")) > A [1] "hsa-let-7a MIMAT0000062 Homo sapiens let-7...

...ess significant question is how I can get the panels to be in the order of the chromosomes as listed in the chromosomes table rather than alphabetical order of their names. thanks Dan > chromosomes chromosome refSeq name length 1 0 NC_000001.9 Homo sapiens chromosome 1 247249719 2 1 NC_000002.10 Homo sapiens chromosome 2 242951149 3 2 NC_000003.10 Homo sapiens chromosome 3 199501827 4 3 NC_000004.10 Homo sapiens chromosome 4 191273063 5 4 NC_000005.8 Homo sapiens chromosome 5 180857866 6 5 NC_00...

Dear All, I need to fetch GO ontologies for Homo sapiens with their mappings to corresponding Uniprot identifiers. I would be using this information to compare result from a clustering algorithm with existing protein complexes. This would be a test to check how the clustering algorithm accurately captures GO terms with respect to the known protein compl...

Hi ALL, I have very simple question regarding pattern matching. Could anyone tell me how to I can use R to retrieve string pattern from text file. for example my file contain following information SpeciesCommon=(Human);SpeciesScientific=(Homo sapiens);ReactiveCentres=(N,C,C,C,+ H,O,C,C,C,C,O,H);BondInvolved=(C-H);EzCatDBID=(S00343);BondFormed=(O-H,O-H);Bond+ 255B);Cofactors=(Cu(II),CU,501,A,Cu(II),CU,502,A);CatalyticSwissProt=(P25006);Sp+ eciesScientific=(Achromobacter cycloclastes);SpeciesCommon=(Bacteria);ReactiveCe+ and I want to extract ?...

...> How about "religion or lack thereof"? I know it can be understood to > be implicit, but as an atheist I tend feel a bit left out of > statements like that. +1!!!! Well, since we're being picky... :D race: last time I checked, we're all members of the same race, homo sapiens sapiens. national origin vs. immigration status: the former is already covered by "culture" for everything that matters, the latter is very specific to one culture. social "class": this is too Marxist*, we should use "social status", since everything is blurred nowada...

...as a frame and now I'd like the columns to be rows and the rows to be columns. What's the easiest way to do this in R? > class(d) [1] "data.frame" > rownames(d) [1] "98x101" "40x98" "30x40" "0x30" > colnames(d) [1] "H..sapiens" "C..elegans" "D..melanogaster" "S..cerevisiae" [5] "E..coli" "M..tuberculosis" "B..subtilis" "V..cholerae" [9] "A..pernix" "P..horikoshii" "M..jannaschii"...

...et ja muut eliöt pyynikki 2 Petteri kasvit, sienet ja muut eliöt harmaaleppä 5 Lauri kasvit, sienet ja muut eliöt lumipuu 9 Teemu linnut kainostelua 1 Petteri linnut viileä harakka 2 Lauri linnut hipö 3 Teemu linnut pinnalla 5 Lassi linnut elämän viiva 7 Lassi nisäkkäät pedot 1 Teemu nisäkkäät Homo sapiens angelus 3 Hate nisäkkäät madekoukkujen suojelupyhimys 3 Lassi nisäkkäät portsan kundi 3 Hannu nisäkkäät maukasta marmeladia 8 Teemu reissut puikot 1 Lassi reissut ajatelkaa, jos Häntä ei olisikaan 2 Lauri reissut kökar 3 Hate reissut matka aikaan joka ei enää palaa 3 Hannu reissut skrinnareita 4 L...

...i 2 Hate vailla armeerausta 2 Lassi ajatelkaa, jos Häntä ei olisikaan 2 Lassi elämän viiva 7 Lassi pedot 1 Lassi portsan kundi 3 Lauri hipö 3 Lauri jääpuut 5 Lauri kökar 3 Lauri lumipuu 9 Petteri harmaaleppä 5 Petteri viileä harakka 2 Teemu harppi 2 Teemu Homo sapiens angelus 3 Teemu kainostelua 1 Teemu pinnalla 5 Teemu portinvartija 6 Teemu puikot 1 Teemu verkkovaja 3 I have done this: pisteet.hannu <- subset(pisteet.sum, kuvaaja == "Hannu", select=c(kuva, yhteispisteet)) (pisteet.hannu <- pisteet.hannu[rev(order(pisteet....

...d I'm getting a bit mad using it. I've managed to produce a barplot with the labels for the ytick marks placed horizontally (perpendicular to the y-axis) usiing par(las=1). The problem is that most of my labels are in part beyond the plotting area because they are rather long (e.g. "H. sapiens", "D. melanogaster" ...). What is the easiest way to solve this problem, can I (somehow) re-scale the x-extension and x-shift the plot to get more space to the left of the visible area? thanks a lot for help, Arne -- Arne Mueller Biomolecular Modelling Laboratory Imperial C...

...of the addressee and may contain confidential, privileged and non-disclosable information. If the recipient of this email is not the addressee, such recipient is strictly prohibited from reading, photocopying, distribution or otherwise using this email or its contents in any way. Please notify the Sapiens (UK) Ltd. Systems Administrator via e-mail immediately at networksupport@sapiens.co.uk, if you have received this email in error. Disclaimer: The views, opinions and guidelines contained in this confidential e-mail are those of the originating author and may not be representative of Sapiens (UK)...

...FORMAT NA00001") be separated by tab : ##fileformat=VCFv4.1 ##fileDate=20090805 ##source=myImputationProgramV3.1 ##reference=file:///seq/references/1000GenomesPilot-NCBI36.fasta ##contig=<ID=20,length=62435964,assembly=B36,md5=f126cdf8a6e0c7f379d618ff66beb2da,species="Homo sapiens",taxonomy=x> ##phasing=partial ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> ##I...

Hi, I''ve a local LAN consisting of about 150 machines. I''m using a Linux machine as the gateway machine which inturn connects to two different ISPs. My question is can a Linux based machine match the performance of a hardware based routers provided by Cisco,... OR is my decision to go for a Linux based solution is a wrong one?. Is there so much difference between these

...> >> be implicit, but as an atheist I tend feel a bit left out of > >> statements like that. > > > > +1!!!! > > > > Well, since we're being picky... :D > > > > race: last time I checked, we're all members of the same race, homo > > sapiens sapiens. > > national origin vs. immigration status: the former is already covered > > by "culture" for everything that matters, the latter is very specific > > to one culture. > > social "class": this is too Marxist*, we should use "social status&q...

...lt;/strong> <div id="content_or_editor_1"> <div id="content_editor_1" style="display: none;"> </div> <div id="content_node_1"> Lorem ipsum dolor sit amet, consectetuer adipiscing elit. Sed at sapien volutpat leo euismod varius. Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Vivamus justo. Pellentesque molestie, enim at ullamcorper tempor, eros ipsum fermentum odio, vitae facilisis lacus nulla vel nisi. Pellentesque habitant morbi tristique senectu...

authoritative riverfront transcribe lit ballet rilly bricklay sapiens keller alexander bleach knob bullyboy sandblast article antipasto bodyguard corsage pause headstone chameleon

Dear R Help Members, I need to draw a pie chart for someone and there are 3 small slices in it identifying different species, all 0.7%, who’s labels overlap so you cannot read them. Is there a way to have only 1 label the three slices, so as to merge the three labels into one without merging the 3 slices? Alternatively, is there a way to extend the pointing lines, so that they could be different

Hi everyone, I''m using a svn pre-commit hook to check manifests for syntax errors. I''ve recently upgraded puppet from 0.22.4 to 0.23.2 and the hook stopped working. I use the following command to parse .pp files: /usr/local/bin/puppet --confdir=/tmp --vardir=/tmp --parseonly --ignoreimport /tmp/$$.pp Now, I make a decision based on the exit code. If 0 then commit, else exit

Dear all, I have a data which is in text file and i would like to import the data to R. From the manual, i?ve found the read.table command function is the most appropriate but when i wrote the command an error had occur. It say ?Error in read.table"C:/Users/user/Documents/cfa-1.txt", header = T, sep = "\t",skip=10) :more columns than column names?. Please help me with this as