search for: sanger

...huge raw input data sets that get denoised). http://184.106.200.248/2012/07/improving-high-throughput-next-gen-sequencing/ Well, today fredrick sangar, the guy who pretty much created the technology necessary for generating "bioinformatics" data, has passed away. In honor of fredrick sanger, it might be interesting to see a community post on all the genomics and bioinformatics organizations out there using gluster to store tera/pedabytes of genomic or bioinformatics data. http://www.genengnews.com/gen-news-highlights/frederick-sanger-father-of-genomic-era-dies-at-95/81249136/ http:/...

Hi Sorry, I am clearly missing something here. I want to read this file directly: ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.gallus_gallus. zip I tried using read.table(gzfile("ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5 .txt.gallus_gallus.zip")) But I got an error: Error in open.connection(file, "r") : cannot open the connection In addition: War...

I would greatly appreciate some example of correct usage of function unz. I have to download and uncompress the following web compressef file: ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.homo_sapiens.zip I tried the following command that does not work: Targets.rec <- readLines(zz <- unz("ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.homo_sapiens.zip")) Thank you in advance, Maura tutti i telefonini TIM!...

.......) Or >CairoXXX(...) Command I get (variations of): >Error in Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg, : Failed to create Cairo backend! Can someone suggest a reason/solution please Cheers Dan Daniel Alcock Malaria Genetics (T112) Wellcome Trust Sanger Institute Cambridge CB10 1SA UK +44 (0)1223 834244 ext. 4994 "The most exciting phrase to hear in science, the one that heralds new discoveries, is not Eureka! But rather, "hmm.... that's funny...." -- Isaac Asimov -- The Wellcome Trust Sanger Institute is operated by Genom...

...414308 ChrX_133620495_133620560_HPRT1 65 ChrX 133620495 133620560 414373 ChrX_133620495_133620560_HPRT1 65 ChrX 133620495 133620560 414438 ChrX_133620692_133620696_HPRT1 4 ChrX 133620692 133620696 414442 ChrX_133624218_133624235_HPRT1 17 ChrX 133624218 133624235 -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

...googling on various aspects of this problem but just seem to find people asking similar questions without answers. Any help greatly appreciated. Client PCs - win XP /2000 Server - windows 2003 server Active Directory. smb.conf: # Global parameters [global] unix charset = LOCALE workgroup = SANGERS realm = SANGERS.LOCAL security = ADS password server = sangersdc1.sangers.local username map = /usr/local/samba/bin/smbusers log file = /var/log/samba/%m max log size = 50 printcap name = CUPS os level = 10 dns proxy = No ldap ssl = no idmap uid = 10000-20000 idmap gid = 10000-20000 template shell...

...r, I'm not sure how to do this. I am wondering is there a way to use the extreme value distribution functions in R to test the hypothesis that the maximum of Y (for a particular X) is correlated with X? I would appreciate advice very much. regards Avril Coghlan -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

...'ve tried dos2unix to make sure the files are ok, added colClasses="character", sep=" " etc but with no success. I'm just about at the end of my tether right now so any help will be gratefully received! Dan Daniel Alcock Malaria Genetics (T112) Wellcome Trust Sanger Institute Daniel Alcock Malaria Genetics (T112) Wellcome Trust Sanger Institute Cambridge CB10 1SA UK +44 (0)1223 834244 ext. 4994 "The most exciting phrase to hear in science, the one that heralds new discoveries, is not Eureka! But rather, "hmm.... that's funny...." --...

...PS: yes, I'm aware that using arrays and dataframes instead of going through the creation of variables may be more practical, but the context is much more complex than the presented example (and in that specific case, having these variables is a requirement) -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a compa ny registered in England with number 2742969, whose registered office is 2 15 Euston Road, London, NW1 2BE. [[alternative HTML version deleted]]

...e the correlation between rows instead ? Or is there an appropriate package or function that is more appropriate I'd like to calculate spearman & pearson correlations between rows. Many thanks Jason -- -------------------------------- Jason Skelton Pathogen Microarrays Wellcome Trust Sanger Institute Hinxton Cambridge CB10 1SA Tel +44(0)1223 834244 Ext 7123 Fax +44(0)1223 494919

...st in order to be able to test for the presence of some elements using their desc (description). Something like lapply(mylist, fun='$desc') doesn't work. For loops could do but are they the best thing I can do ? Thanks a lot for your help ! Amelie -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a compa ny registered in England with number 2742969, whose registered office is 2 15 Euston Road, London, NW1 2BE. [[alternative HTML version deleted]]

...yle be changed for 'cloud' plots? I've tried par(lend=2), trellis.par.set(add.line = list(lend=2)) and much googling but to no avail Thanks in advance Dan P.S. the reason for this is that the round end looks bad at lwd=3 or more Daniel Alcock Malaria Genetics (T112) Wellcome Trust Sanger Institute Cambridge CB10 1SA UK +44 (0)1223 834244 ext. 4994 "The most exciting phrase to hear in science, the one that heralds new discoveries, is not Eureka! But rather, "hmm.... that's funny...." -- Isaac Asimov -- The Wellcome Trust Sanger Institute is operated by Genom...

...datasets methods base other attached packages: [1] cgh_1.0-2 loaded via a namespace (and not attached): [1] rcompgen_0.1-17 Thank you very much for your help, Best wishes celine ************************************** Celine Carret, PhD Pathogen Microarrays Wellcome Trust Sanger Institute Hinxton, Cambridge CB10 1SA, UK tel.+44-1223494940 fax.+44-1223494919 ************************************** -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in Engl...

Hi, I do not get how par works, help please. Let's say I have a simple plot: plot(1:10) I want to change the font size for the x axis... how do I do that? Thank you, Stephane -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a compa ny registered in England with number 2742969, whose registered office is 2 15 Euston Road, London, NW1 2BE. [[alternative HTML version deleted]]

Jim Lemon <bitwrit <at> ozemail.com.au> writes: > I have been thinking about how to reduce the number of basic questions that > elicit the ...ahem... robust debate that has occurred about how to answer The traffic on r-help could be reduced by creating a second list where more elementary questions are asked. There may be other ways to partition the universe of questions

...tself, it installs fine. When installing r-recommended=3.4.2-1trusty1 by itself, it sneakily installs 3.4.3 without saying anything. When trying to install r-base=3.4.2-1trusty1, it catches this cognitive dissonance and falls on its face. Some help please? Sincerely, Krzysztof -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. [[alternative HTML version deleted]]

...,3,4,5,6,7,8,9) and I want to find the probability there is a value smaller than a new value. new_value<-4 (such that I'd get this type of output) new_value p-value 4 0.5 3.4 0.4 3 0.4 0 0.1 -1 0.0 Thanks for the help, I bet this is really easy... :/ Stephen -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

Hello Please find bug report attached. Thanks Matthew -- Matthew Gillman Team 105: Variation Informatics Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK Tel: 01223 834244 Ext. 4922 -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969,...

Greetings! OS: Windows R 2.0.1 Before anyone flames -- I tried to query this on the R searchable web site and using google and did not find anything applicable. As of about a week ago the help.search function dies when used in the simple help.search("something") usage. The error is Error in rbind(...) : number of columns of matrices must match (see arg 203) After some effort I have

To whom it may concern: My OS: CentOS 5.5 R version: R-2.11.1 My questions are as follows: First, I inputted commands: ----------------------------- # ./configure --enable-R-shlib # make # make check ----------------------------- Everything goes well until "make check". screen log: ************************************** make[1]: Entering directory `/tmp/R-2.11.1/tests' make[2]: