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Hi, I am trying to using SAMseq() to analyze my RNA-seq experiment (20000 genes x 550 samples) with survival endpoint. It quickly give the following error: > library(samr)Loading required package: imputeLoading required package: matrixStats Attaching package: ?matrixStats? The following objects are masked from ?package:Biobase...

Sorry forgot to use plain text format, hope this time it works: Hi, I am trying to using SAMseq() to analyze my RNA-seq experiment (20000 genes x 550 samples) with survival endpoint. It quickly give the following error: > library(samr) Loading required package: impute Loading required package: matrixStats Attaching package: ?matrixStats? The following objects are masked from ?package:Bi...

...a major new version 2.0 of the samr package for large scale significance testing, especially for gene expression data. This new version handles RNA-seq data, using the new method described in http://www-stat.stanford.edu/~tibs/ftp/Li_Tibs.pdf We have also added simple interface functions SAM and SAMseq. Comments (and bug reports) welcome! -- I get so much email that I might not reply to an incoming email, just because it got lost. So don't hesitate to email me again. The probability of a reply should increase. Prof. Robert Tibshirani ?Depts of Health Research and Policy, and Statistics...