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2012 Mar 30
1
Help with the lumi R package
...code for my own data.
lumi package in R, example.lumi, the sample data has 8000 features and 4
samples
I have highlighted the code I have questions on in red, my data has 4
different types of samples, each repeated 6 times, so a total of 24 samples
and about 48,000 rows. how should I identify my sampleType in my case? also
what does colnames(design) <- c('100:0', '95:5-100:0') do, which columns
exactly does it take into consideration? Thanks!
so the sample code i'm trying to follow is below:
###################################################
### code chunk number 30: filt...
2009 Feb 09
1
XML package- accessing nodes based on attributes
...t\TCGA-06-0875-01A-01D-0387-02_US23502331_251469343372_S01_CGH-v4_10_Apr08.txt"/>
<Characteristic Type ="Patient" eName="PatientReference" eValue="TCGA-06-0875-01A"/>
<Characteristic Type ="Patient" eName="SampleType" eValue="TUMOR"/>
<Characteristic Type ="Patient" eName="SampleMarker" eValue="cy3"/>
<Characteristic Type ="Patient" eName="PatientDateOfBirth" eValue="080808"/>...
2012 Mar 30
0
Help with lumi package R code
...code for my own data.
lumi package in R, example.lumi, the sample data has 8000 features and 4
samples
I have highlighted the code I have questions on in red, my data has 4
different types of samples, each repeated 6 times, so a total of 24 samples
and about 48,000 rows. how should I identify my sampleType in my case? also
what does colnames(design) <- c('100:0', '95:5-100:0') do, which columns
exactly does it take into consideration? Thanks!
so the sample code i'm trying to follow is below:
###################################################
### code chunk number 30: filt...