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...eached total allocation of 1023Mb: see help(memory.size) 2: Reached total allocation of 1023Mb: see help(memory.size) 3: Reached total allocation of 1023Mb: see help(memory.size) 4: Reached total allocation of 1023Mb: see help(memory.size) If I understand correctly, both methods should give the sameish results (modulo the initial random locations) since the default in kmeans is "Hartigan-Wong". My data frame is 3 columns X 15555 lines. It must be that kmeans is more a "core" R function whereas clust id from the clustTool package, but isn't clustTool simply wrapping the c...