search for: runlast

...b") at sysutils.c:311 311 { (gdb) where #0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311 #1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178 #2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0, runLast=<optimized out>) at sys-std.c:1243 #3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE, status=status at entry=0, runLast=<optimized out>) at system.c:87 #4 0x00005555556cc85e in do_quit (call=<optimized out>, op=<optimized out>, args=0x555557813f90, rho...

...opers, Some of the more fat scripts (50+ GB mem used by R) that I am running, when they finish they do quit with q("no", status=0) Quite often it happens that there is an extra stderr output produced at the very end which looks like this: Warning message: In .Internal(quit(save, status, runLast)) : system call failed: Cannot allocate memory Is there any way to avoid this kind of warnings? I am using stderr output for detecting failures in scripts and this warning is a false positive of a failure. Maybe quit function could wait little bit longer trying to allocate before it raises this...

(On Unix/Linux) Is it possible to set the --no-save command line option as an option in the .Rprofile file. I have looked in the sources and do not see any obvious (user initiated) ways of changing the command line defaults, but I am hoping I have missed something. I *know* I can write my own shell script wrapper that calls R with whatever arguments I want (and I do that). However there

...age? [y/n/c]: n *** caught segfault *** address (nil), cause 'unknown' Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace Selection: 3 Error: no graphics system to unregister > > q("no", runLast = FALSE) Error in q("no", runLast = FALSE) : no graphics system to unregister -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...>> (gdb) where >> #0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311 >> #1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178 >> #2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0, runLast=<optimized out>) at sys-std.c:1243 >> #3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE, status=status at entry=0, runLast=<optimized out>) at system.c:87 >> #4 0x00005555556cc85e in do_quit (call=<optimized out>, op=<optimized out>, args=0...

...r-project.org > Reply-To: r-help at r-project.org > On Apr 3, 2013, at 23:58 , Julian Wells wrote: > >> Can someone explain why all of a sudden I can't quit? > > Almost certainly because you have a .Last function that fails. Either get rid of it, or try q("n", runLast=FALSE). > > -pd > ------------------------------ > > Message: 6 > Date: Thu, 04 Apr 2013 12:33:24 +0100 > From: Prof Brian Ripley <ripley at stats.ox.ac.uk> > To: r-help at r-project.org > Subject: Re: [R] Problem quitting > Message-ID: <515D6504.4070102 at...

...9; Delete downloaded files (y/N)? y Warning message: Installation of package e1071 had non-zero exit status in: install.packages("e1071") > library(e1071) Error in library(e1071) : There is no package called 'e1071' > quit function (save = "default", status = 0, runLast = TRUE) .Internal(quit(save, status, runLast)) <environment: namespace:base>

...package:base R Documentation > > Terminate an R Session > > Description: > > The function 'quit' or its alias 'q' terminate the current R > session. > > Usage: > > quit(save = "default", status = 0, runLast = TRUE) > q(save = "default", status = 0, runLast = TRUE) > .Last <- function(x) { ...... } > > Arguments: > > save: a character string indicating whether the environment > (workspace) should be saved, one of '"no"', ...

...1 > 311 { > (gdb) where > #0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311 > #1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178 > #2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0, runLast=<optimized out>) at sys-std.c:1243 > #3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE, status=status at entry=0, runLast=<optimized out>) at system.c:87 > #4 0x00005555556cc85e in do_quit (call=<optimized out>, op=<optimized out>, args=0x5555578...

...t;>>> #0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311 >>>> #1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178 >>>> #2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0, runLast=<optimized out>) at sys-std.c:1243 >>>> #3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE, status=status at entry=0, runLast=<optimized out>) at system.c:87 >>>> #4 0x00005555556cc85e in do_quit (call=<optimized out>, op=<optimized...

...where > >> #0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311 > >> #1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178 > >> #2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0, runLast=<optimized out>) at sys-std.c:1243 > >> #3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE, status=status at entry=0, runLast=<optimized out>) at system.c:87 > >> #4 0x00005555556cc85e in do_quit (call=<optimized out>, op=<optimized out&g...

...ognized as an internal or external command, operable program or batch file. C:\Program Files\R>1+1 '+1' is not recognized as an internal or external command, operable program or batch file. C:\Program Files\R>q C:\Program Files\R> function (save = "default", status = 0, runLast = TRUE) .Internal(quit(save, status, runLast)) <environment: namespace:base> > Clearly both cmd.exe and R is trying to parse the stdin. Some keystrokes goes to R and some to cmd.exe. Best wishes Henrik Bengtsson Div. of Mathematical Statistics @ Centre for Mathematical Sciences Lund In...

Hi all, i am new here and this is my first posting. My coding experience in R ist okay, but I have a problem which is related to another aspect of R. I am searching for a surface which execute my commands in R via a click on a button OUTSIDE of R. Concrete: I will write some programs in R and want to execute this files outside of R, so I don't want to start R eyery time if i want an

...scripts (50+ GB mem used by R) that I am running, > when they finish they do quit with q("no", status=0) > Quite often it happens that there is an extra stderr output produced > at the very end which looks like this: > > Warning message: > In .Internal(quit(save, status, runLast)) : > system call failed: Cannot allocate memory > > Is there any way to avoid this kind of warnings? I am using stderr > output for detecting failures in scripts and this warning is a false > positive of a failure. > > Maybe quit function could wait little bit longer trying...

...ch=", : cannot popen ' '/usr/local/lib64/R/bin/R' --no-save --slave 2>&1 < '/tmp/RtmpZB2yyH/file64c65776e871'', probable reason 'Cannot allocate memory' * removing ?/usr/local/lib64/R/library/ddalpha? Warning in q("no", status = status, runLast = FALSE) : system call failed: Cannot allocate memory > sessionInfo() R version 3.5.0 Patched (2018-04-23 r74633) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Slackware 14.2 x86_64 (post 14.2 -current) Matrix products: default BLAS: /usr/local/lib64/R/lib/libRblas.so LAPACK: /usr/l...

...gs[3]), sep = " "), sep = "\n") ix = grep("--arg", args, fixed = TRUE) if (ix < length(args)){ for (i in (ix+1):length(args)) { cat(paste("argument #",i-ix,"-->",args[i], sep=" "), sep = "\n") } } ecode = 0 q(runLast = FALSE, save = "no", status = ecode) ###### script end ###### output file begin All the arguments... /Library/Frameworks/R.framework/Resources/bin/exec/i386/R -f /Users/Shared/code/R/hbb/pam/script.r --restore --save --no-readline --slave --vanilla --args dogs cats verbose=TRUE nargs...

I have an R file R_test.R saved in C:\R_test folder. The R_test.R looks like this: setwd("C:/R_test") rnorm(100) write(rnorm(100),"data.txt") q(save="no", runLast = F) Next I would like use an Excel VBA/macro Shell() function to call R and execute R_test.R file. The syntax is *Shell(pathname*[*,windowstyle*]*)* I wrote an Excel macro RunRcode like this: Sub RunRcode() Dim RetVal RetVal = "C:\Program Files\R\R-2.10.1\bin\Rgui.exe & C:\R_test...

Dear Sir, The R interface that i am currently using is R 2.4.1( in Win XP). I am not able to terminate the program by giving the q() command. Each time I pass this command, > q() Error in .Last() : could not find function "finalizeSession" this error creeps in and it neither allows me to save my workspace nor come out of R. Therefore, whenever this happens, I am forced to end the

Digital Alpha (various), Digital UNIX V4.0[EF], R-1.0.0, gcc, f77 When using batch mode with the save option, an error message is issued. However [I have just discovered that] it appears that the operation does complete, i.e. the .RData file is saved successfully. The main problem is that the return code is non-zero (and so it is impossible to distinguish this "non-error" from some

...E, SA_SAVE, SA_SAVEASK, SA_SUICIDE } SA_TYPE; ------------------------------------------------------------- from non-exported header file ${R_HOME}/src/unix/Runix.h ------------------------------------------------------------- extern void Rstd_CleanUp(SA_TYPE saveact, int status, int runLast); Use: ------------- When the PostgreSQL backend process exits, Rstd_CleanUp() is called via registered onexit callback so that the embedded R interpreter can clean up (e.g. to remove the created Rtmp[pid] directory). Note: ------------- Similar use found in ${R_HOME}/tests/Embedding/Rerror.c