Displaying 10 results from an estimated 10 matches for "rstd_cleanup".
2003 Aug 24
1
declarations in non-exported headers and embedding R
...DEFAULT,/* was === SA_RESTORE */
SA_NOSAVE,
SA_SAVE,
SA_SAVEASK,
SA_SUICIDE
} SA_TYPE;
-------------------------------------------------------------
from non-exported header file ${R_HOME}/src/unix/Runix.h
-------------------------------------------------------------
extern void Rstd_CleanUp(SA_TYPE saveact, int status, int runLast);
Use:
-------------
When the PostgreSQL backend process exits, Rstd_CleanUp() is called via
registered onexit callback so that the embedded R interpreter can clean
up (e.g. to remove the created Rtmp[pid] directory).
Note:
-------------
Similar use foun...
2020 Nov 23
2
.Internal(quit(...)): system call failed: Cannot allocate memory
...and at entry=0x7fffffffa1e0 "rm -Rf
/tmp/RtmppoKPXb") at sysutils.c:311
311 {
(gdb) where
#0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf
/tmp/RtmppoKPXb") at sysutils.c:311
#1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178
#2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0,
runLast=<optimized out>) at sys-std.c:1243
#3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE,
status=status at entry=0, runLast=<optimized out>) at system.c:87
#4 0x00005555556cc85e in do_quit (call=<optimized out>,...
2020 Nov 24
2
.Internal(quit(...)): system call failed: Cannot allocate memory
.../RtmppoKPXb") at sysutils.c:311
>> 311 {
>> (gdb) where
>> #0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311
>> #1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178
>> #2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0, runLast=<optimized out>) at sys-std.c:1243
>> #3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE, status=status at entry=0, runLast=<optimized out>) at system.c:87
>> #4 0x00005555556cc85e in do_quit (call=<o...
2004 Feb 18
1
R would not quit (bug?) (PR#6600)
Hello.
I am not sure if this is a bug.
I loaded into R a very large matrix, around 600,000 X 30 integers. My
machine has 2G ram.
After trying to write.table a modification of this matrix, R generated
some sort of malloc error.
Then,
Error: vector memory exhausted (limit reached?)
> q()
Save workspace image? [y/n/c]: n
*** malloc: vm_allocate(size=8421376) failed (error code=3)
***
2020 Nov 24
0
.Internal(quit(...)): system call failed: Cannot allocate memory
...e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311
> 311 {
> (gdb) where
> #0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311
> #1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178
> #2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0, runLast=<optimized out>) at sys-std.c:1243
> #3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE, status=status at entry=0, runLast=<optimized out>) at system.c:87
> #4 0x00005555556cc85e in do_quit (call=<optimized...
2020 Nov 25
1
[External] Re: .Internal(quit(...)): system call failed: Cannot allocate memory
...;>>> 311 {
>>>> (gdb) where
>>>> #0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311
>>>> #1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178
>>>> #2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0, runLast=<optimized out>) at sys-std.c:1243
>>>> #3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE, status=status at entry=0, runLast=<optimized out>) at system.c:87
>>>> #4 0x00005555556cc85e in do_...
2020 Nov 24
0
.Internal(quit(...)): system call failed: Cannot allocate memory
...utils.c:311
> >> 311 {
> >> (gdb) where
> >> #0 R_system (command=command at entry=0x7fffffffa1e0 "rm -Rf /tmp/RtmppoKPXb") at sysutils.c:311
> >> #1 0x00005555557c30ec in R_CleanTempDir () at sys-std.c:1178
> >> #2 0x00005555557c31d7 in Rstd_CleanUp (saveact=<optimized out>, status=0, runLast=<optimized out>) at sys-std.c:1243
> >> #3 0x00005555557c593d in R_CleanUp (saveact=saveact at entry=SA_NOSAVE, status=status at entry=0, runLast=<optimized out>) at system.c:87
> >> #4 0x00005555556cc85e in do_quit (...
2020 Nov 21
4
.Internal(quit(...)): system call failed: Cannot allocate memory
Dear R-developers,
Some of the more fat scripts (50+ GB mem used by R) that I am running,
when they finish they do quit with q("no", status=0)
Quite often it happens that there is an extra stderr output produced
at the very end which looks like this:
Warning message:
In .Internal(quit(save, status, runLast)) :
system call failed: Cannot allocate memory
Is there any way to avoid this
2006 Aug 31
2
stop R mainloop without calling exit(1)
...plIteration(...):
------------------------------------------------------------------
value = eval(R_CurrentExpr, rho);
+if(value == NULL)
+return(-1);
src/main/main.c : do_quit():
-------------------------------------
//exit(0);
+return(NULL)
I also removed the call to exit in src/linux/sys-std.c:Rstd_CleanUp
and src/gnuwin32/system.c:R_CleanUp for linux and windows
respectively.
This is obviously a quick hack to make it work (but it works fine,
also the standalone R exits ok this way), but I can imagine more
people want to use the mainloop with the possibility to return from it
without making their ap...
2018 Apr 12
1
WGCNA package installation segmentation fault
Hi all,
a user contacted me about a segfault when installing WGCNA package
dowloaded from CRAN. I also see a segfault like that on certain
installs of R.
The package passes all CRAN checks, so presumably this has something
to do with the R installation or environment. The R versions here are
not the newest but I would guess that this is not an R version issue.
I'm attaching two